Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0790.Seq
         (621 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13019-3|AAC24452.2|  713|Caenorhabditis elegans Hypothetical pr...    54   8e-08
Z68011-3|CAA92014.2|  821|Caenorhabditis elegans Hypothetical pr...    33   0.12 
AC024869-3|AAK68605.2|  452|Caenorhabditis elegans Synaptotagmin...    29   3.5  
L14429-2|AAP68927.1|  229|Caenorhabditis elegans Hypothetical pr...    27   8.2  
L14429-1|AAA28219.2|  575|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>U13019-3|AAC24452.2|  713|Caenorhabditis elegans Hypothetical
           protein T12A2.15a protein.
          Length = 713

 Score = 54.0 bits (124), Expect = 8e-08
 Identities = 26/83 (31%), Positives = 49/83 (59%)
 Frame = +2

Query: 254 NSCKKLPNARVQSRPDPYLMVTVGKKTENTAVQLRTDDPVYEIGYSFLVQNPEIDTLDVK 433
           +S   LP  + +  P P++ V++GK+T+ T V+++T +P+++  + F V++ E   L  +
Sbjct: 430 DSVADLPYPKSKLEPSPFVEVSLGKETQRTPVKVKTVNPLFQSKFLFFVRHLEGQELKFE 489

Query: 434 VLDQKTGSQLGQLFYSISALLKE 502
            +D  T   LG L   ++ LLKE
Sbjct: 490 AVDDGTRRSLGSLNIPLTTLLKE 512



 Score = 27.5 bits (58), Expect = 8.2
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +3

Query: 120 EHGKVQLRLSWHRLSTDVTELSRALTETLLIKTG-DLSSAVLSVYITRVRSYRTP 281
           +HG + ++ +W  LST++  L +   E    +    + SA+L VYI  V     P
Sbjct: 384 KHGDLHIKATWMNLSTELRHLEKQEWEAEWGQADKPIHSALLMVYIDSVADLPYP 438


>Z68011-3|CAA92014.2|  821|Caenorhabditis elegans Hypothetical
           protein T21B6.3 protein.
          Length = 821

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = -3

Query: 139 SWTLPCSLVARSAKCPSGQIEQLEICPM--NTCRG-NHRSECPSQGPSP 2
           +W+  C     SA C SGQ E+   C +  N C G ++ SE  S GP P
Sbjct: 504 TWSEWCEWSTCSASCGSGQRERTRFCHLGTNRCEGKDYESEQCSAGPCP 552


>AC024869-3|AAK68605.2|  452|Caenorhabditis elegans Synaptotagmin
           protein 3 protein.
          Length = 452

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 10/87 (11%)
 Frame = +2

Query: 260 CKKLPNARVQSRPDPYLMV--TVGKKT---ENTAVQLRTDDPVYEIGYSFLVQNPEIDT- 421
           CK L    V    DPY+ +   +G K    + T ++++T +P Y   +SF V + ++   
Sbjct: 167 CKNLKKMDVLGLSDPYVKIYLMMGTKRLEKKKTTIKMKTLNPYYNESFSFDVTSEKMQRV 226

Query: 422 -LDVKVLD-QKTGS--QLGQLFYSISA 490
            L V V D  + GS  ++GQ+     A
Sbjct: 227 HLHVTVSDYDRVGSNERIGQVIIGTCA 253


>L14429-2|AAP68927.1|  229|Caenorhabditis elegans Hypothetical
           protein ZK652.6b protein.
          Length = 229

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 465 PSWLPVFWSRTLTSSVSISGFWTRKEY 385
           P WLP+ +  T   S    G+W+ K +
Sbjct: 42  PGWLPLSFETTPIRSTGCGGYWSDKRF 68


>L14429-1|AAA28219.2|  575|Caenorhabditis elegans Hypothetical
           protein ZK652.6a protein.
          Length = 575

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 465 PSWLPVFWSRTLTSSVSISGFWTRKEY 385
           P WLP+ +  T   S    G+W+ K +
Sbjct: 388 PGWLPLSFETTPIRSTGCGGYWSDKRF 414


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,155,867
Number of Sequences: 27780
Number of extensions: 288579
Number of successful extensions: 795
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)