Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0790.Seq
         (621 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   1.8  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   1.8  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   2.4  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 1   WDWDPGMGIQNDDYLG 48
           +++DPG G   DDY+G
Sbjct: 136 FNYDPGRGHIEDDYVG 151


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 16  GMGIQNDDYLGRCS 57
           G GIQ+ D++G CS
Sbjct: 383 GFGIQSTDFVGDCS 396


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +1

Query: 316 DGWQKNRKHRRATAN 360
           D WQK R HR   AN
Sbjct: 873 DCWQKERTHRPTFAN 887


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,608
Number of Sequences: 438
Number of extensions: 3400
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)