Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0788.Seq
         (717 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    25   0.81 
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    23   3.3  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   3.3  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   7.6  

>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 24.6 bits (51), Expect = 0.81
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -2

Query: 161 GHRWRDDGRQEIVRSKRQSEVLIAKAVRLVSQDEWQQR 48
           GH W+ D  +E VR++ Q   L   A  +   D+ ++R
Sbjct: 117 GHEWQADVSEEAVRARMQD--LTEGAKNMTINDDLEKR 152


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -3

Query: 478 GSRSPGSDHGQH 443
           G+RSPG DH ++
Sbjct: 14  GARSPGGDHSEN 25


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 38  SKNVSAAIHPGIPTEPPSRSGLRTGAYSGRSP 133
           S NV AA HP +   P +    +    S +SP
Sbjct: 21  SMNVKAAEHPSLRGTPLAMLAAQCNKLSNKSP 52


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 114 APVRSPDREGGSVGIPG*MA 55
           AP++ P REG     PG +A
Sbjct: 436 APIKGPGREGFYTQNPGFLA 455


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,164
Number of Sequences: 336
Number of extensions: 2927
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19051215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)