Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0788.Seq
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    28   1.5  
SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    26   6.2  
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi...    26   6.2  

>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 68  GIPTEPPSRSGLRTGAYSGRSPDG 139
           G+P  P   SG   G Y GR+P G
Sbjct: 423 GVPFSPSMPSGSSRGGYHGRNPGG 446


>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -2

Query: 491 ARSSWQPESWERSRSAHR 438
           ++  WQP+SW+ SR+ ++
Sbjct: 70  SKEGWQPKSWKSSRNENK 87


>SPAC20G8.04c |||mitochondrial electron transfer
           flavoprotein-ubiquinone
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 350 HGYISRQFTRRYALPENCNPDT 415
           HG +S+   +R+ L  NC P T
Sbjct: 269 HGSLSKSIIKRFNLRGNCEPQT 290


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,579,657
Number of Sequences: 5004
Number of extensions: 48787
Number of successful extensions: 127
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)