Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0788.Seq
(717 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0483 - 8804021-8804485 47 1e-05
03_02_0484 + 8805053-8805538 47 2e-05
03_02_0478 + 8775892-8776377 46 2e-05
03_02_0485 - 8808139-8808618 45 5e-05
01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457 44 9e-05
01_01_0229 - 1943473-1943922 44 1e-04
01_01_0231 + 1951047-1951499 44 2e-04
01_01_0227 + 1933247-1933699 41 9e-04
03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015 38 0.011
02_01_0222 + 1450233-1450766 37 0.018
03_05_0543 - 25404630-25405408,25405461-25405605 34 0.13
11_02_0041 - 7669692-7670312 33 0.30
06_01_1017 - 7951985-7952425 33 0.30
02_02_0077 - 6586638-6587165 33 0.30
07_01_0533 + 3942813-3943164,3943244-3943458 31 0.69
02_05_0736 - 31327010-31327030,31327047-31327556 31 0.69
03_01_0219 + 1731267-1731728,1732148-1732235,1732330-1732417,173... 30 1.6
02_03_0351 + 18030656-18030823,18030963-18031113,18031214-180313... 29 3.7
08_01_1042 + 10560340-10560627,10561001-10561415,10561571-10561614 29 4.9
10_07_0141 + 13347648-13348331 28 6.4
05_07_0296 - 29061900-29061923,29062026-29062440,29062529-290625... 28 6.4
03_02_0312 - 7326092-7326148,7326415-7326540,7327744-7327821,732... 28 6.4
12_02_1174 - 26696869-26698191 28 8.5
08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,468... 28 8.5
06_01_1042 + 8187536-8187616,8187713-8188315 28 8.5
05_03_0001 - 7269231-7269436,7269536-7270100,7270600-7270821,727... 28 8.5
>03_02_0483 - 8804021-8804485
Length = 154
Score = 47.2 bits (107), Expect = 1e-05
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 8/92 (8%)
Frame = +2
Query: 257 DVQHFSPEEISVKTADGYVI-VEGKH----EERQDEHGYISR---QFTRRYALPENCNPD 412
DV EE+ V+ DG V+ + G+ EE+ D+ + R +F RR+ LPEN P+
Sbjct: 63 DVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPE 122
Query: 413 TVESRLSSDGVLTVIAPRTPAATKNERAVPIT 508
+++ + +GVLTV P+ + +++ IT
Sbjct: 123 QIKASM-ENGVLTVTVPKEEPKKPDVKSIQIT 153
>03_02_0484 + 8805053-8805538
Length = 161
Score = 46.8 bits (106), Expect = 2e-05
Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 8/92 (8%)
Frame = +2
Query: 257 DVQHFSPEEISVKTADGYVI-VEGKH----EERQDEHGYISR---QFTRRYALPENCNPD 412
DV EE+ V+ DG V+ + G+ EE+ D+ + R +F RR+ LPEN P+
Sbjct: 70 DVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPE 129
Query: 413 TVESRLSSDGVLTVIAPRTPAATKNERAVPIT 508
+++ + +GVLTV P+ + +++ +T
Sbjct: 130 QIKASM-ENGVLTVTVPKEEPKKPDVKSIQVT 160
>03_02_0478 + 8775892-8776377
Length = 161
Score = 46.4 bits (105), Expect = 2e-05
Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 8/92 (8%)
Frame = +2
Query: 257 DVQHFSPEEISVKTADGYVI-VEGKH----EERQDEHGYISR---QFTRRYALPENCNPD 412
DV EE+ V+ DG ++ + G+ EE+ D+ + R +F RR+ LP+N P+
Sbjct: 70 DVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPE 129
Query: 413 TVESRLSSDGVLTVIAPRTPAATKNERAVPIT 508
+++ + +GVLTV P+ A + +++ I+
Sbjct: 130 QIKASM-ENGVLTVTVPKEEAKKPDVKSIQIS 160
>03_02_0485 - 8808139-8808618
Length = 159
Score = 45.2 bits (102), Expect = 5e-05
Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 8/92 (8%)
Frame = +2
Query: 257 DVQHFSPEEISVKTADGYVI-VEGKH----EERQDEHGYISR---QFTRRYALPENCNPD 412
DV EE+ V+ DG ++ + G+ EE+ D+ + R +F RR+ LPEN P+
Sbjct: 68 DVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPE 127
Query: 413 TVESRLSSDGVLTVIAPRTPAATKNERAVPIT 508
+++ + +GVLTV P+ + +++ I+
Sbjct: 128 QIKASM-ENGVLTVTVPKEEPKKPDVKSIQIS 158
>01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457
Length = 438
Score = 44.4 bits (100), Expect = 9e-05
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Frame = +2
Query: 257 DVQHFSPEEISVKTADGYVIV-----EGKHEERQDEHGYISR---QFTRRYALPENCNPD 412
D+ EE+ V+ +G V+V + E++ D+ + R QF RR+ LPEN D
Sbjct: 59 DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVD 118
Query: 413 TVESRLSSDGVLTVIAPRTPAATKNERAVPIT 508
V++ L +GVLTV P+ +A+ I+
Sbjct: 119 QVKAGL-ENGVLTVTVPKAEVKKPEVKAIEIS 149
>01_01_0229 - 1943473-1943922
Length = 149
Score = 44.0 bits (99), Expect = 1e-04
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Frame = +2
Query: 257 DVQHFSPEEISVKTADGYVIV-----EGKHEERQDEHGYISR---QFTRRYALPENCNPD 412
D+ EE+ V+ +G V+V + E++ D+ + R QF RR+ LPEN D
Sbjct: 58 DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVD 117
Query: 413 TVESRLSSDGVLTVIAPRTPAATKNERAVPIT 508
V++ + +GVLTV P+ +A+ I+
Sbjct: 118 QVKASM-ENGVLTVTVPKAEVKKPEVKAIEIS 148
>01_01_0231 + 1951047-1951499
Length = 150
Score = 43.6 bits (98), Expect = 2e-04
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Frame = +2
Query: 257 DVQHFSPEEISVKTADGYVIV-----EGKHEERQDEHGYISR---QFTRRYALPENCNPD 412
D+ EE+ V+ +G V+V + E++ D+ + R QF RR+ LPEN D
Sbjct: 59 DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVD 118
Query: 413 TVESRLSSDGVLTVIAPRTPAATKNERAVPIT 508
V++ + +GVLTV P+ +A+ I+
Sbjct: 119 QVKAGM-ENGVLTVTVPKAEVKKPEVKAIEIS 149
>01_01_0227 + 1933247-1933699
Length = 150
Score = 41.1 bits (92), Expect = 9e-04
Identities = 22/64 (34%), Positives = 34/64 (53%)
Frame = +2
Query: 317 VEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLSSDGVLTVIAPRTPAATKNERA 496
V+GK++ER S +F RR+ LP D V + + +GVLTV P+ +A
Sbjct: 87 VDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASM-DNGVLTVTVPKEETKKPQLKA 145
Query: 497 VPIT 508
+PI+
Sbjct: 146 IPIS 149
>03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015
Length = 327
Score = 37.5 bits (83), Expect = 0.011
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 10/88 (11%)
Frame = +2
Query: 251 QLDVQHFSPEEISVKTADGYVIVEGKHEERQDE------HGYISRQ----FTRRYALPEN 400
+ D+ S EE+ V D +++ G+H++ + E G+ + + R ALP+
Sbjct: 147 RFDMPGLSREEVKVMVEDDALVIRGEHKKEEGEGAEGSGDGWWKERSVSSYDMRLALPDE 206
Query: 401 CNPDTVESRLSSDGVLTVIAPRTPAATK 484
C+ V + L +GVL V P+T K
Sbjct: 207 CDKSKVRAEL-KNGVLLVTVPKTEVERK 233
>02_01_0222 + 1450233-1450766
Length = 177
Score = 36.7 bits (81), Expect = 0.018
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Frame = +2
Query: 278 EEISVKTADGYVI-VEGKHEERQDEHGY-------ISRQFTRRYALPENCNPDTVESRLS 433
EE+ V+ + V+ + G+ +E G S +F R LP N N D V + L
Sbjct: 93 EEVRVEVEEEKVLRISGQRARAAEEKGERWHRVERSSERFVRTVRLPPNANTDGVHAALD 152
Query: 434 SDGVLTVIAPRTPAATKNERAVPIT 508
+ GVLT+ P+ + R +PIT
Sbjct: 153 N-GVLTITIPKDNDRKPHARIIPIT 176
>03_05_0543 - 25404630-25405408,25405461-25405605
Length = 307
Score = 33.9 bits (74), Expect = 0.13
Identities = 22/98 (22%), Positives = 47/98 (47%), Gaps = 7/98 (7%)
Frame = +2
Query: 242 IPGQLDVQ--HFSPEEISVKTADGYVIVEGK-HEERQDEH---GYISRQFTRRYALPENC 403
+PG+ + H S +++ K + V+V+ H + E G +F + + LP +C
Sbjct: 32 LPGKNTINSIHLSLDQLGFKREEIRVLVDNHGHLRTRGERPVAGNRWSRFQKDFQLPADC 91
Query: 404 NPDTVESRLSSDGVLTVIAPRTPA-ATKNERAVPITKP 514
N D + ++ ++ + + +TP+ T + P+T P
Sbjct: 92 NVDGIRAKFENEALTITLPKKTPSPLTPSPTPSPVTPP 129
>11_02_0041 - 7669692-7670312
Length = 206
Score = 32.7 bits (71), Expect = 0.30
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +2
Query: 368 QFTRRYALPENCNPDTVESRLSSDGVLTVIAPRTPAATKNERAVPITKPARSG 526
+F RR+ +P + V +RL DGVLTV P+ P E V A +G
Sbjct: 141 RFWRRFRMPPGADVGRVAARLD-DGVLTVTVPKVPGHRGREPRVVAIDGAGAG 192
>06_01_1017 - 7951985-7952425
Length = 146
Score = 32.7 bits (71), Expect = 0.30
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Frame = +2
Query: 284 ISVKTADGYVIVEGKHEERQDEHGYISR----QFTRRYALPENCNPDTVESRLSSDGVLT 451
++V+ A + E + E +D +++ +F R ALP + + + + + GVLT
Sbjct: 65 LTVRGAAPHAAAEKEREREKDVVWHVAERGRPEFAREVALPAEVRVEQIRASVDN-GVLT 123
Query: 452 VIAPRTPAATKNERAVPI 505
V+ P+ PA + R PI
Sbjct: 124 VVVPKEPAPAR-PRTRPI 140
>02_02_0077 - 6586638-6587165
Length = 175
Score = 32.7 bits (71), Expect = 0.30
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 13/104 (12%)
Frame = +2
Query: 254 LDVQHFSPEEISVKTADGYVIVEGKHEERQ----DEHG----YISRQ-----FTRRYALP 394
+D+ +P ++ V+ DG V+ R D+ G Y+ + F RR+ LP
Sbjct: 66 VDMPGVAPADVRVEVEDGNVLAISGERRRPAGDGDDGGEGVKYLRMERRMGKFMRRFPLP 125
Query: 395 ENCNPDTVESRLSSDGVLTVIAPRTPAATKNERAVPITKPARSG 526
E+ + D V + DGVLTV + P + V K A +G
Sbjct: 126 ESADLDGVRAEY-KDGVLTVTVDKKPPPEPKKPRVVEVKVAGAG 168
>07_01_0533 + 3942813-3943164,3943244-3943458
Length = 188
Score = 31.5 bits (68), Expect = 0.69
Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 3/91 (3%)
Frame = +2
Query: 374 TRRYALPENCNPDTVESRLSSDGVLTVIAPRTPAATKNERAVPITKPARSGRRLRSPLRK 553
TR LP CN T + S + + +P TP AT AVP PA +G +P
Sbjct: 97 TRALELPAACNVKTPPASQCSTVGVPMPSPATP-ATPAAPAVPSETPAGTGGSKATPTTA 155
Query: 554 LRATKQNNDSRN---AVNQKSVIACVNFICI 637
T Q+ + A + +V+ V F I
Sbjct: 156 TTTTGQSASGGSVGKAASMATVVVSVAFALI 186
>02_05_0736 - 31327010-31327030,31327047-31327556
Length = 176
Score = 31.5 bits (68), Expect = 0.69
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Frame = +2
Query: 401 CNPDTVESRLSSDGVLTVIAPRTPAATKNERAVPITKPARSGRRLRSPLRKLRATKQNND 580
C P E + GV + + TPA K ++ + + R RRL R L A KQ
Sbjct: 97 CTPRREELEAAEAGVRRLFSRHTPAWMKKQKRLQRRERERDERRLNKQKRPL-ALKQQQL 155
Query: 581 SRNAVNQKSVI--ACVNFICI 637
A ++V+ A +NF+ I
Sbjct: 156 KAQAPMTRAVLLFAYLNFVVI 176
>03_01_0219 +
1731267-1731728,1732148-1732235,1732330-1732417,
1732528-1732573,1732687-1732785,1734363-1734431,
1735706-1736036,1736123-1736256,1736400-1737251
Length = 722
Score = 30.3 bits (65), Expect = 1.6
Identities = 24/88 (27%), Positives = 39/88 (44%)
Frame = -3
Query: 673 TIKRSVSQARTRNANKINTRYNTFLIHSVPRVIVLFRCSQLPQWAP*SPSGPGRFSDGNS 494
TI++ ++ RTRNAN I TR + FL H+ P R + + SGP ++ +
Sbjct: 351 TIRKRLTGDRTRNAN-ITTRDSPFLQHNTPGSFAGKRTDRFGDY-----SGPSKYGKKTT 404
Query: 493 SLVLRGSRSPGSDHGQHTVRGQPRFDSV 410
+ R S + Q P F ++
Sbjct: 405 PTISDDERR--STYDQQYFHSSPLFSAL 430
>02_03_0351 +
18030656-18030823,18030963-18031113,18031214-18031309,
18032027-18032103,18032627-18032706,18033216-18033276,
18034153-18034220,18034312-18034393,18034552-18034638,
18035009-18035086,18035336-18035455,18035554-18035730
Length = 414
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = +2
Query: 470 PAATKNERAVPITKPARSGRRLRSPLRKLRATKQNNDSR 586
P + +RA+P+ +PA R+R LR L+ +++D++
Sbjct: 284 PPVEEKKRALPV-RPATKAERMRDCLRNLKQQNKDDDAK 321
>08_01_1042 + 10560340-10560627,10561001-10561415,10561571-10561614
Length = 248
Score = 28.7 bits (61), Expect = 4.9
Identities = 21/67 (31%), Positives = 27/67 (40%)
Frame = +2
Query: 350 HGYISRQFTRRYALPENCNPDTVESRLSSDGVLTVIAPRTPAATKNERAVPITKPARSGR 529
HG Y LPE+ V SR S T +PR P V ++ A+
Sbjct: 80 HGLSLVPIDHGYRLPESPPRPRVASRRQSTHAPTAPSPRQPGRLPAHLTV-ASRAAQPAS 138
Query: 530 RLRSPLR 550
RLR+P R
Sbjct: 139 RLRAPAR 145
>10_07_0141 + 13347648-13348331
Length = 227
Score = 28.3 bits (60), Expect = 6.4
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +2
Query: 353 GYISRQFTRRYALPENCNPDTVESRLSSD-GVLTVIAPRTPAATKNERAVPITKPARSGR 529
G+I+ +F RRY + ++ P+ E+ L+ D +L ++ A N RA R R
Sbjct: 31 GFITNKFGRRYGVGDHGTPE--EAALAHDRAILAILGAHASPAALNFRAAFSDTELRFLR 88
Query: 530 RLRSPLRK 553
+P R+
Sbjct: 89 GPHAPSRR 96
>05_07_0296 -
29061900-29061923,29062026-29062440,29062529-29062566,
29062689-29062741,29062851-29063034,29064486-29064669,
29064761-29064916,29064998-29065173,29065277-29065454,
29066015-29066421
Length = 604
Score = 28.3 bits (60), Expect = 6.4
Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 7/105 (6%)
Frame = +2
Query: 293 KTADGYVIVEGKHEERQDEHGYISRQFTRRYALPE------NCNPDTVESRLSSDGV-LT 451
+TA GY+ + E R+D H + TR+ + + C P T+++ + G+ +
Sbjct: 343 RTAVGYLDITRLSELRRDAHPSVFTPSTRKRDVKKLVQEHSPCQPSTLQADAYTTGLSMK 402
Query: 452 VIAPRTPAATKNERAVPITKPARSGRRLRSPLRKLRATKQNNDSR 586
I R N+ VP TK R + L K R T+ D +
Sbjct: 403 EIERRRKIGAANKGKVPWTK-GRKLSKEHKELIKRRTTEALRDPK 446
>03_02_0312 -
7326092-7326148,7326415-7326540,7327744-7327821,
7327916-7328178,7328699-7328741,7329581-7329632,
7329705-7329871,7330135-7330194,7330291-7330374,
7330654-7330758,7330840-7330899,7330976-7331032
Length = 383
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = -3
Query: 532 SPSGPGRFSDGNSSLVLRGSRS-PGSDHGQ 446
S SG G S+G+S+ GSR+ GS+HGQ
Sbjct: 178 SESGSGSSSEGSSTNSKSGSRTKDGSEHGQ 207
>12_02_1174 - 26696869-26698191
Length = 440
Score = 27.9 bits (59), Expect = 8.5
Identities = 19/70 (27%), Positives = 31/70 (44%)
Frame = +2
Query: 269 FSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLSSDGVL 448
F E++ V+ D + ++ E G +F + LP+NC+ D V +R D L
Sbjct: 33 FRKEQVRVQV-DNHGMLRATGERPPAARGGRWVRFKKDLRLPDNCDADAVRARF-DDHKL 90
Query: 449 TVIAPRTPAA 478
+ P AA
Sbjct: 91 IITLPLVAAA 100
>08_01_0539 +
4679392-4681282,4682060-4682104,4682403-4683560,
4683834-4684204,4684290-4684835,4684927-4685027,
4685117-4685933,4686025-4686213,4686313-4686384,
4686477-4686587,4686647-4686652,4686694-4686794,
4687714-4687813,4687891-4687986,4688157-4688273,
4688367-4688492,4688566-4688619,4688745-4688992,
4689087-4689195,4689284-4689583,4689799-4689963
Length = 2240
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Frame = +2
Query: 23 RMLK*SKNVSAAIHPGIPTEPPSRSGL-------RTGAYSGRSPDGRHHANDVQRL 169
R++K + I P + PPSRS R+ + G S +HH +D Q L
Sbjct: 811 RVVKDQSSSELRIKPKVADRPPSRSSRSHSIGTDRSSTHEGSSHSKKHHEHDSQSL 866
>06_01_1042 + 8187536-8187616,8187713-8188315
Length = 227
Score = 27.9 bits (59), Expect = 8.5
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +2
Query: 458 APRTPAATKNERAVPITKPA---RSGRRLRSPLRKLRATKQNNDSRN 589
A RTPA T+ ERA +PA GRR R+ R +Q SR+
Sbjct: 57 AARTPARTERERAPLAARPAGEEEEGRR-AGGWRRRRRRRQRRGSRS 102
>05_03_0001 -
7269231-7269436,7269536-7270100,7270600-7270821,
7270913-7271155,7271227-7271481,7272017-7272370,
7273082-7273164,7273250-7273630,7273874-7274027
Length = 820
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = +2
Query: 74 PTEPPSRSGLRTGAYSGRSPDGRHHANDVQRLLPSVEADGD 196
P + G R A P+G A D + L+ E+DG+
Sbjct: 60 PRRSGAEQGARRAAAGSEKPEGSEEAEDEEFLVEEYESDGE 100
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,422,032
Number of Sequences: 37544
Number of extensions: 358418
Number of successful extensions: 1278
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1277
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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