Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0788.Seq
(717 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12) 66 2e-11
SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26) 63 2e-10
SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29) 60 2e-09
SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 56 2e-08
SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 56 2e-08
SB_21424| Best HMM Match : HSP20 (HMM E-Value=0) 55 7e-08
SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 7e-08
SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26) 53 2e-07
SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05) 39 0.005
SB_21512| Best HMM Match : HRDC (HMM E-Value=3.5) 35 0.076
SB_24406| Best HMM Match : DUF536 (HMM E-Value=1.5) 33 0.31
SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05) 31 0.93
SB_43382| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_13144| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_46344| Best HMM Match : ig (HMM E-Value=0.0082) 29 5.0
SB_26957| Best HMM Match : PDZ (HMM E-Value=0) 29 5.0
SB_6600| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_58590| Best HMM Match : Polysacc_deac_1 (HMM E-Value=2.6e-08) 28 8.7
SB_50451| Best HMM Match : Avirulence (HMM E-Value=0.14) 28 8.7
SB_43241| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
Length = 210
Score = 66.5 bits (155), Expect = 2e-11
Identities = 30/69 (43%), Positives = 47/69 (68%)
Frame = +2
Query: 254 LDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLS 433
LDV+++ PEEIS+K G + ++GKH+ + EHGY + +F R Y LP+ + TV SR++
Sbjct: 45 LDVKNYRPEEISLKVEHGRIKIDGKHKS-EGEHGYETSEFHRSYNLPDGVDVSTVSSRIT 103
Query: 434 SDGVLTVIA 460
DG+L + A
Sbjct: 104 GDGLLHIEA 112
Score = 34.3 bits (75), Expect = 0.10
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = +2
Query: 377 RRYALPENCNPDTVESRLSSDGVLTVIAPRTPAATKNERAVPITKPA 517
R + LP++ + D++ SRL DG L + A R T +ER V I + A
Sbjct: 161 RHFVLPKDVDMDSLVSRLGKDGKLYIEAKRILHPTPHERQVNILRDA 207
>SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)
Length = 185
Score = 63.3 bits (147), Expect = 2e-10
Identities = 34/87 (39%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Frame = +2
Query: 254 LDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLS 433
LDV+ F PEEI+ K +G + V G + + E G+ S++F R Y LPE + ++ +R++
Sbjct: 11 LDVREFKPEEITCKVENGKIKVSGL-QRHESEEGFDSKEFRRCYNLPEGVDESSISTRIA 69
Query: 434 SDGVLTVIA-PRTPAATKNERAVPITK 511
DG+L V A ++P AT +A P TK
Sbjct: 70 EDGMLHVEALKKSPPATTENKA-PATK 95
Score = 56.0 bits (129), Expect = 3e-08
Identities = 30/74 (40%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Frame = +2
Query: 254 LDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYIS-RQFTRRYALPENCNPDTVESRL 430
LDV F PEE+ VK + V + E +EHG+ + RQF R + LP + DT+ RL
Sbjct: 104 LDVSDFKPEEVDVKVYGHELSVRARQE--CEEHGFFTARQFNRHFVLPREVDMDTLVPRL 161
Query: 431 SSDGVLTVIAPRTP 472
DGVL + A + P
Sbjct: 162 GKDGVLYIEADKRP 175
>SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)
Length = 189
Score = 60.1 bits (139), Expect = 2e-09
Identities = 29/70 (41%), Positives = 45/70 (64%)
Frame = +2
Query: 251 QLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRL 430
+LDV+ + PEEIS K +G V V+G+H + E G+ ++F R + LPE +P+ V SR+
Sbjct: 11 KLDVKEYRPEEISFKVENGVVKVQGRH-VNEGEFGFELKEFRRTFTLPEGIDPENVTSRI 69
Query: 431 SSDGVLTVIA 460
S+ G L + A
Sbjct: 70 SNHGHLHIEA 79
Score = 45.6 bits (103), Expect = 4e-05
Identities = 23/74 (31%), Positives = 38/74 (51%)
Frame = +2
Query: 254 LDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLS 433
+DV F PE I V+ ++V HE + H Y + F R++ LP + D++ +RL
Sbjct: 102 IDVAGFPPESIKVQVLGNELLVNANHEVEHEGH-YHAMHFNRQFVLPREVDMDSLTTRLD 160
Query: 434 SDGVLTVIAPRTPA 475
+G L A ++ A
Sbjct: 161 KEGKLHFEAKKSVA 174
>SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 56.4 bits (130), Expect = 2e-08
Identities = 27/70 (38%), Positives = 44/70 (62%)
Frame = +2
Query: 251 QLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRL 430
+LDV+ + PEEIS K +G+V V+G+H + G+ ++F R +ALPE V++R+
Sbjct: 11 KLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFALPEGVEASNVKTRI 69
Query: 431 SSDGVLTVIA 460
S+ G L + A
Sbjct: 70 SNHGQLHIEA 79
Score = 43.6 bits (98), Expect = 2e-04
Identities = 20/65 (30%), Positives = 34/65 (52%)
Frame = +2
Query: 254 LDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLS 433
+DV F P+ I V+ ++V HE + H Y + F R++ LP + D++ +RL
Sbjct: 103 MDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFVLPREVDMDSLTTRLD 161
Query: 434 SDGVL 448
+G L
Sbjct: 162 KEGKL 166
>SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 56.4 bits (130), Expect = 2e-08
Identities = 27/70 (38%), Positives = 44/70 (62%)
Frame = +2
Query: 251 QLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRL 430
+LDV+ + PEEIS K +G+V V+G+H + G+ ++F R +ALPE V++R+
Sbjct: 11 KLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFALPEGVEASNVKTRI 69
Query: 431 SSDGVLTVIA 460
S+ G L + A
Sbjct: 70 SNHGQLHIEA 79
Score = 43.6 bits (98), Expect = 2e-04
Identities = 20/65 (30%), Positives = 34/65 (52%)
Frame = +2
Query: 254 LDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLS 433
+DV F P+ I V+ ++V HE + H Y + F R++ LP + D++ +RL
Sbjct: 103 MDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFVLPREVDMDSLTTRLD 161
Query: 434 SDGVL 448
+G L
Sbjct: 162 KEGKL 166
>SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)
Length = 424
Score = 54.8 bits (126), Expect = 7e-08
Identities = 26/70 (37%), Positives = 43/70 (61%)
Frame = +2
Query: 251 QLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRL 430
+LDV+ + PEEIS K +G+V V+G+H + G+ ++F R + LPE V++R+
Sbjct: 11 KLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFTLPEGVEASNVKTRI 69
Query: 431 SSDGVLTVIA 460
S+ G L + A
Sbjct: 70 SNHGQLHIEA 79
Score = 54.8 bits (126), Expect = 7e-08
Identities = 26/70 (37%), Positives = 43/70 (61%)
Frame = +2
Query: 251 QLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRL 430
+LDV+ + PEEIS K +G+V V+G+H + G+ ++F R + LPE V++R+
Sbjct: 245 KLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFTLPEGVEASNVKTRI 303
Query: 431 SSDGVLTVIA 460
S+ G L + A
Sbjct: 304 SNHGQLHIEA 313
Score = 43.6 bits (98), Expect = 2e-04
Identities = 20/65 (30%), Positives = 34/65 (52%)
Frame = +2
Query: 254 LDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLS 433
+DV F P+ I V+ ++V HE + H Y + F R++ LP + D++ +RL
Sbjct: 103 MDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFVLPREVDMDSLTTRLD 161
Query: 434 SDGVL 448
+G L
Sbjct: 162 KEGKL 166
Score = 43.6 bits (98), Expect = 2e-04
Identities = 20/65 (30%), Positives = 34/65 (52%)
Frame = +2
Query: 254 LDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLS 433
+DV F P+ I V+ ++V HE + H Y + F R++ LP + D++ +RL
Sbjct: 337 MDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFVLPREVDMDSLTTRLD 395
Query: 434 SDGVL 448
+G L
Sbjct: 396 KEGKL 400
>SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 760
Score = 54.8 bits (126), Expect = 7e-08
Identities = 26/70 (37%), Positives = 43/70 (61%)
Frame = +2
Query: 251 QLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRL 430
+LDV+ + PEEIS K +G+V V+G+H + G+ ++F R + LPE V++R+
Sbjct: 11 KLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFTLPEGVEASNVKTRI 69
Query: 431 SSDGVLTVIA 460
S+ G L + A
Sbjct: 70 SNHGQLHIEA 79
Score = 43.6 bits (98), Expect = 2e-04
Identities = 20/65 (30%), Positives = 34/65 (52%)
Frame = +2
Query: 254 LDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLS 433
+DV F P+ I V+ ++V HE + H Y + F R++ LP + D++ +RL
Sbjct: 103 MDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFVLPREVDMDSLTTRLD 161
Query: 434 SDGVL 448
+G L
Sbjct: 162 KEGKL 166
>SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26)
Length = 695
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/70 (37%), Positives = 42/70 (60%)
Frame = +2
Query: 251 QLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRL 430
+LDV+ + PEEIS K +G V V+G+H + G+ ++F R + LPE V++R+
Sbjct: 12 KLDVREYRPEEISFKVENGVVKVQGRH-VNEGPFGFELKEFRRTFTLPEGVEASNVKTRI 70
Query: 431 SSDGVLTVIA 460
S+ G L + A
Sbjct: 71 SNHGQLHIEA 80
Score = 44.8 bits (101), Expect = 7e-05
Identities = 21/65 (32%), Positives = 35/65 (53%)
Frame = +2
Query: 254 LDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLS 433
+DV+ F PE I V+ ++V HE + H Y + F R++ LP + D++ +RL
Sbjct: 103 MDVKGFPPEAIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFILPREVDMDSLTTRLD 161
Query: 434 SDGVL 448
+G L
Sbjct: 162 KEGKL 166
>SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05)
Length = 259
Score = 38.7 bits (86), Expect = 0.005
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +2
Query: 254 LDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYI-SRQFTRRYALPE 397
LDV F PEE+ VK + V + E +EHG+ +RQF R + LP+
Sbjct: 32 LDVSDFKPEEVDVKVYGHELSVRARQE--CEEHGFFTARQFNRHFVLPQ 78
>SB_21512| Best HMM Match : HRDC (HMM E-Value=3.5)
Length = 191
Score = 34.7 bits (76), Expect = 0.076
Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -3
Query: 679 INTIKRSVSQARTRNANKINTRYNTF-LIHSVPRVIVL-FRCSQLPQWAP*SPSGP 518
++ IKRS T N N NTR + L H V R ++L FR LP WA P P
Sbjct: 130 LSLIKRSSQFNSTGNINYTNTRMKCYALRHCVNRAVLLKFRALSLPTWAYSIPYQP 185
>SB_24406| Best HMM Match : DUF536 (HMM E-Value=1.5)
Length = 436
Score = 32.7 bits (71), Expect = 0.31
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +2
Query: 326 KHEERQDEHGYISRQFTRRYAL 391
KHEER+D HGY+ + T ++AL
Sbjct: 72 KHEEREDRHGYLKDKVTLQHAL 93
>SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)
Length = 3397
Score = 31.1 bits (67), Expect = 0.93
Identities = 22/77 (28%), Positives = 34/77 (44%)
Frame = +2
Query: 320 EGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLSSDGVLTVIAPRTPAATKNERAV 499
E K+EE DEHG I R+ T+ TV ++ DGV T A + + E +
Sbjct: 1187 ETKYEEYVDEHGQIIRRTTKVKHTAVKQERTTVTKTVTRDGVTTREANVIESPPEVESST 1246
Query: 500 PITKPARSGRRLRSPLR 550
+ + S R P++
Sbjct: 1247 QVYRDEESSVRDIKPIK 1263
>SB_43382| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 861
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = -3
Query: 676 NTIKRSVSQARTRNANKI--NTRYNTFLIHSVPRVIVLFRCSQLPQW 542
+TIK++V RN+N++ + R+ TFL+ PR+ R QW
Sbjct: 424 STIKQTVQGFVMRNSNQMKKDVRFQTFLVICSPRLAEAMRGLDFEQW 470
>SB_13144| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 29.1 bits (62), Expect = 3.8
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +2
Query: 290 VKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPE 397
+++A GYV+ G H + + G + + R LP+
Sbjct: 10 IRSARGYVVTSGSHTSKSEVRGIMEETCSNRNPLPQ 45
>SB_46344| Best HMM Match : ig (HMM E-Value=0.0082)
Length = 181
Score = 28.7 bits (61), Expect = 5.0
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -2
Query: 269 SVERLVDLEFILIRGDGGTDVSIGDRHL-LPRTVVISGHRWRDDGRQEIVR 120
SVERL+DL I IR GG + RH L VV+ W + G ++ R
Sbjct: 71 SVERLIDLAAISIR--GGDPLESTCRHASLALAVVLQRRDWENPGVTQLNR 119
>SB_26957| Best HMM Match : PDZ (HMM E-Value=0)
Length = 1685
Score = 28.7 bits (61), Expect = 5.0
Identities = 23/98 (23%), Positives = 37/98 (37%), Gaps = 3/98 (3%)
Frame = +2
Query: 260 VQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLSSD 439
+ H+ + T + G+ E + Y+SR TR+ A P + PD S + +
Sbjct: 1565 MSHYQASTVLKNTGTSVELALGRSREAAE---YLSR--TRQQASPHSTEPDIKPSNIQTT 1619
Query: 440 GVLTVIAPRTPAATKNERAVP---ITKPARSGRRLRSP 544
I+PR R P KP+ + SP
Sbjct: 1620 ESTPSISPRGVEVAAGPRRTPPPVAPKPSTDSLKRSSP 1657
>SB_6600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 28.3 bits (60), Expect = 6.6
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = -2
Query: 227 GDGGTDVSIGDRHLLPRTVVISGHRWRDDGRQEIVRSKRQSEVLIAKAVRLVSQDEWQQR 48
G G + S G++ + V +WR +G + RS + EV K V + +W+QR
Sbjct: 132 GSGDRERSGGEKEVETEKEVEGSRKWRREGSGDRERSGGEKEVETEKEVE--ERRKWRQR 189
>SB_58590| Best HMM Match : Polysacc_deac_1 (HMM E-Value=2.6e-08)
Length = 893
Score = 27.9 bits (59), Expect = 8.7
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
Frame = +2
Query: 347 EHGYISRQFTRRYALPEN-CNPDTVESRLSSDGVLTVIAPRTPAATKNERAVPITKPARS 523
+ G + + T Y+L E C+ S ++ GV+T + N+R I P R
Sbjct: 144 QKGDVEIETTNLYSLKEQVCDFVEASSCIAFSGVVTGANSTSSRFKTNDRVCGIMSPCRV 203
Query: 524 GRRLRSPLRKLRATKQNNDSRNA 592
G ++R +L Q + A
Sbjct: 204 GEKVRCKEARLMTQPQGLNGMQA 226
>SB_50451| Best HMM Match : Avirulence (HMM E-Value=0.14)
Length = 1085
Score = 27.9 bits (59), Expect = 8.7
Identities = 17/58 (29%), Positives = 25/58 (43%)
Frame = +3
Query: 117 TPDDLLTAVITPTMSRDYYRPWKQMAIANRDVGSTITSNKDKFQVN*TFNTFRPKKSQ 290
+P T P + +YYRP KQ G+T T+ + N N +RP + Q
Sbjct: 845 SPGTTTTTTTVPWNNNNYYRPLKQQQQLLPSPGTTTTTTTVPWNNN---NYYRPLEQQ 899
>SB_43241| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2022
Score = 27.9 bits (59), Expect = 8.7
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -1
Query: 570 CFVALSFRSGLLNLLPDRAGLVMGTARSFFVAAGVLGAITVSTPSEDN 427
C + +RS L +LP LV F V G ++VS PSE++
Sbjct: 1535 CCLFTEYRSRLEAMLPSSEHLVRSAEVKFKVFPGPAKELSVSLPSEES 1582
>SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1396
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/27 (55%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +2
Query: 68 GIPTEPPSRSGLRTGAYSGRS-PDGRH 145
G P+ PPSRS RT SG S D RH
Sbjct: 853 GKPSTPPSRSKKRTRGISGDSVSDNRH 879
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,094,124
Number of Sequences: 59808
Number of extensions: 404021
Number of successful extensions: 1326
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1321
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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