Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0786.Seq
(748 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ... 93 3e-20
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ... 60 2e-10
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 37 0.004
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 30 0.30
SPBC11G11.01 |fis1||mitochondrial fission protein Fis1 |Schizosa... 30 0.40
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch... 27 2.8
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 27 2.8
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi... 27 3.8
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 5.0
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 26 5.0
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 23 6.5
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 25 8.7
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos... 25 8.7
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ... 25 8.7
>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 93.5 bits (222), Expect = 3e-20
Identities = 41/84 (48%), Positives = 55/84 (65%)
Frame = +1
Query: 259 MEIYSTCLWHLQREAQLSALAQELVELNRTNPIAWLVAGNCFSLHKERETALKFFRRAVQ 438
ME++ST LWHLQ+ LS LA E +E N +P +W + NCFSL +E ALK RA+Q
Sbjct: 400 MEVFSTALWHLQKSVPLSYLAHETLETNPYSPESWCILANCFSLQREHSQALKCINRAIQ 459
Query: 439 LNPDAAYAHALLGHEYAVAEETDK 510
L+P YA+ L GHE++ EE +K
Sbjct: 460 LDPTFEYAYTLQGHEHSANEEYEK 483
Score = 48.0 bits (109), Expect = 1e-06
Identities = 22/73 (30%), Positives = 41/73 (56%)
Frame = +2
Query: 38 LLSLMKEIGEAYKYLAFLDCKNAIKSFQELPPKQLASPWVQTMIARSHYELAQYEAAAKI 217
L+ L+K G+ LA + A+ FQ LP +Q +P+V + +++EL YE + ++
Sbjct: 326 LMELLKLFGKGVYLLAQYKLREALNCFQSLPIEQQNTPFVLAKLGITYFELVDYEKSEEV 385
Query: 218 FSEIRKQYPNRTE 256
F ++R P+R +
Sbjct: 386 FQKLRDLSPSRVK 398
Score = 43.2 bits (97), Expect = 4e-05
Identities = 20/71 (28%), Positives = 38/71 (53%)
Frame = +3
Query: 534 VSIDPRNYVAWFGIATVYARQERWKASEVHIRRALSIHPLSGVLRCQLGLAQSALGKMER 713
+ ++ R+Y AW+G+ VY + R ++ H +RA I+P + VL +G+ ++
Sbjct: 492 IRVNVRHYNAWYGLGMVYLKTGRNDQADFHFQRAAEINPNNSVLITCIGMIYERCKDYKK 551
Query: 714 ALSTLEKAVAL 746
AL ++A L
Sbjct: 552 ALDFYDRACKL 562
>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 565
Score = 60.5 bits (140), Expect = 2e-10
Identities = 30/82 (36%), Positives = 48/82 (58%)
Frame = +1
Query: 259 MEIYSTCLWHLQREAQLSALAQELVELNRTNPIAWLVAGNCFSLHKERETALKFFRRAVQ 438
M+ YS L+ L+ +++L LAQ +++ P + GN +SL E E A+ +F+RA+Q
Sbjct: 307 MDTYSNVLFVLENKSKLGFLAQVASSIDKFRPETCSIIGNYYSLLSEHEKAVTYFKRALQ 366
Query: 439 LNPDAAYAHALLGHEYAVAEET 504
LN + A L+GHEY + T
Sbjct: 367 LNRNYLSAWTLMGHEYVELKNT 388
Score = 28.3 bits (60), Expect = 1.2
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +1
Query: 331 VELNRTNPIAWLVAGNCFSLHKERETALKFFRRAVQLNPDAAYAHALLGHEYAVAE 498
++LNR AW + G+ + K A++ +R AV +N A LG Y V +
Sbjct: 365 LQLNRNYLSAWTLMGHEYVELKNTHAAIESYRLAVDVNRKDYRAWYGLGQTYEVLD 420
Score = 26.6 bits (56), Expect = 3.8
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +1
Query: 331 VELNRTNPIAWLVAGNCFSLHKERETALKFFRRAVQLNPDAAYAHALLGHEY 486
V++NR + AW G + + AL +F+RA L P LG+ Y
Sbjct: 399 VDVNRKDYRAWYGLGQTYEVLDMHFYALYYFQRATALRPYDQRMWQALGNCY 450
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1389
Score = 36.7 bits (81), Expect = 0.004
Identities = 19/69 (27%), Positives = 36/69 (52%)
Frame = +3
Query: 540 IDPRNYVAWFGIATVYARQERWKASEVHIRRALSIHPLSGVLRCQLGLAQSALGKMERAL 719
I P++ AW G+ YAR R+ ++ RA + P ++ + + +G+ E A+
Sbjct: 679 ISPKDTNAWSGLGEAYARSGRYVSALKAFNRASILDPDDWYVKYFIATLEKDMGEYEVAV 738
Query: 720 STLEKAVAL 746
STL + +A+
Sbjct: 739 STLSEILAV 747
Score = 28.7 bits (61), Expect = 0.93
Identities = 19/69 (27%), Positives = 31/69 (44%)
Frame = +3
Query: 534 VSIDPRNYVAWFGIATVYARQERWKASEVHIRRALSIHPLSGVLRCQLGLAQSALGKMER 713
++ DPRNY A G V E++ + + L H L +L G + +
Sbjct: 457 LAADPRNYHALLGKGLVQIENEQYSDAVKTLGLLLDDHENDPSL-SELSWCYFKTGNLPK 515
Query: 714 ALSTLEKAV 740
A+ST+EK +
Sbjct: 516 AISTVEKCL 524
Score = 25.8 bits (54), Expect = 6.6
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +1
Query: 322 QELVELNRTNPIAWLVAGNCFSLHKERETALKFFRRAVQLNPDAAY 459
Q + ++ + AW G ++ +ALK F RA L+PD Y
Sbjct: 674 QSALRISPKDTNAWSGLGEAYARSGRYVSALKAFNRASILDPDDWY 719
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 30.3 bits (65), Expect = 0.30
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +2
Query: 179 HYELAQYEAAA-KIFSEIRKQYPNRTEGWK 265
H++ A+ E KIF+ IR+QYP GWK
Sbjct: 551 HFDFAKPELKMFKIFNFIREQYPALKSGWK 580
>SPBC11G11.01 |fis1||mitochondrial fission protein Fis1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 29.9 bits (64), Expect = 0.40
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 167 IARSHYELAQYEAAAKIFSEIRKQYPNRTEGWKFTVPVY 283
IA SHY+L QYE + + + + + PN E K +Y
Sbjct: 84 IALSHYKLKQYEESRRYLNMLLSKDPNSPEALKLKNRLY 122
>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 27.1 bits (57), Expect = 2.8
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +2
Query: 11 PPKNSNGVALLSLMKEIGEAYKYLAFLDCKNAIKSFQELPP 133
P KN+ + + KE+GEAY L+ + + S +L P
Sbjct: 378 PDKNAGNLEAEARFKEVGEAYTILSDPESRRRFDSGVDLEP 418
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 27.1 bits (57), Expect = 2.8
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 322 QELVELNRTNPIAWLVAGNCFSLHKERETALKFFRRAVQLNP 447
Q+ V + NP W G + + + AL + RA++LNP
Sbjct: 608 QQAVYRDGRNPTFWCSIGVLYYQINQYQDALDAYSRAIRLNP 649
>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 817
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +3
Query: 534 VSIDPRNYVAWFGIATVYARQERWKASEVHIRRALSIHPLSG 659
+ I+P +Y WF +++ A+ R LSI+P G
Sbjct: 548 LKINPLSYPTWFTYGCAALELQKYDAAMEAFSRCLSINPEDG 589
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.2 bits (55), Expect = 5.0
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -3
Query: 194 EPIHNGYVRSWFVPKVKPIVLEVTLERILLHFYSLKMQDI 75
+P+H G + W V K+K VLE E + S K D+
Sbjct: 1553 KPMHYGIISEWDVSKLKIRVLEQGRESKKVSVASYKFGDL 1592
>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 786
Score = 26.2 bits (55), Expect = 5.0
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +2
Query: 581 SLRTTRTLESIRSSHTPCSQYTSTFRSVEMSVRSGTVCSRKNG 709
S TT T + R++ P + ++ +S S R+GT + NG
Sbjct: 151 STPTTTTARTTRTTPRPTATTNTSNQSTSNSTRNGTSAATSNG 193
>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 475
Score = 22.6 bits (46), Expect(2) = 6.5
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +2
Query: 134 KQLASPWVQTMIARSHYELAQY 199
K+ SPW+ +R +E+A+Y
Sbjct: 406 KETWSPWILPSESRLKFEMAKY 427
Score = 21.4 bits (43), Expect(2) = 6.5
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +2
Query: 65 EAYKYLAFLDCKNAIKSF 118
E Y LAFL N IKSF
Sbjct: 355 EGYVPLAFLASFNRIKSF 372
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 25.4 bits (53), Expect = 8.7
Identities = 12/48 (25%), Positives = 22/48 (45%)
Frame = -1
Query: 535 TANLKLARAYQFLLLRRIRALIMHVHKQHLDLAELHV*RTLMQFHVPY 392
T N+ L + + +MHV + ++ LH+ R+ H+PY
Sbjct: 1077 TLNMALKSEFDMTDFNNSGSKLMHVLHARIFISVLHLWRSADDLHLPY 1124
>SPBC725.07 |pex5||peroxisomal targeting signal receptor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 25.4 bits (53), Expect = 8.7
Identities = 15/66 (22%), Positives = 27/66 (40%)
Frame = +3
Query: 543 DPRNYVAWFGIATVYARQERWKASEVHIRRALSIHPLSGVLRCQLGLAQSALGKMERALS 722
+P N + W + E+ + RA+S+ P +R + ++ LG E A
Sbjct: 468 EPSNEILWNKLGAALTNAEKNTEAVSSYNRAVSLQPQYVRVRSNMAVSNINLGYFEDAAK 527
Query: 723 TLEKAV 740
L A+
Sbjct: 528 HLLAAI 533
>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
2|||Manual
Length = 962
Score = 25.4 bits (53), Expect = 8.7
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = -3
Query: 197 IEPIHNGY---VRSWFVPKVKPIVLEVTLERILLHFYSLKMQDIYKLLLFLS*DSTMLLH 27
I+ IH G + + FV PI + R +LH +S + +DI L L S+ +H
Sbjct: 732 IKSIHPGSLSGISNSFVNSKHPIEQWQSRLRKILHLFSGRNEDIASLQCVLQFGSSERIH 791
Query: 26 LNSLE 12
L ++
Sbjct: 792 LEDIQ 796
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,935,217
Number of Sequences: 5004
Number of extensions: 56575
Number of successful extensions: 183
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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