Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0786.Seq
(748 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58934| Best HMM Match : TPR_1 (HMM E-Value=3.8e-37) 121 7e-28
SB_23063| Best HMM Match : TPR_1 (HMM E-Value=3.1e-07) 42 7e-04
SB_25367| Best HMM Match : TPR_1 (HMM E-Value=2.4e-40) 39 0.004
SB_38446| Best HMM Match : TPR_1 (HMM E-Value=9.5e-17) 37 0.020
SB_52347| Best HMM Match : TPR_1 (HMM E-Value=0) 37 0.020
SB_12855| Best HMM Match : TPR_2 (HMM E-Value=2.3e-12) 34 0.11
SB_23059| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.57
SB_28258| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.99
SB_49858| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_29526| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_15501| Best HMM Match : Not1 (HMM E-Value=4.6e-37) 29 5.3
SB_6733| Best HMM Match : 7tm_1 (HMM E-Value=9.6e-36) 29 5.3
SB_59116| Best HMM Match : TPR_1 (HMM E-Value=6.7e-15) 28 7.0
SB_36896| Best HMM Match : MetJ (HMM E-Value=8.3) 28 9.2
SB_30764| Best HMM Match : Dynein_heavy (HMM E-Value=0) 28 9.2
SB_11617| Best HMM Match : TPR_1 (HMM E-Value=0) 28 9.2
>SB_58934| Best HMM Match : TPR_1 (HMM E-Value=3.8e-37)
Length = 1632
Score = 121 bits (291), Expect = 7e-28
Identities = 52/85 (61%), Positives = 67/85 (78%)
Frame = +1
Query: 256 GMEIYSTCLWHLQREAQLSALAQELVELNRTNPIAWLVAGNCFSLHKERETALKFFRRAV 435
GMEIYST LWHLQ+E +LS+LA LVE++R++P AW GNCFSL KE +TA+KFF+RAV
Sbjct: 1335 GMEIYSTILWHLQKEVELSSLAHHLVEVDRSSPEAWCATGNCFSLQKEHDTAIKFFQRAV 1394
Query: 436 QLNPDAAYAHALLGHEYAVAEETDK 510
Q++ YA+ LLGHEY + EE D+
Sbjct: 1395 QVDQACTYAYTLLGHEYVLTEELDR 1419
Score = 79.8 bits (188), Expect = 2e-15
Identities = 33/68 (48%), Positives = 50/68 (73%)
Frame = +3
Query: 543 DPRNYVAWFGIATVYARQERWKASEVHIRRALSIHPLSGVLRCQLGLAQSALGKMERALS 722
DPR+Y AW+G+ +Y +QE++ +EVH R+ALSI+P S VL C +G+ Q A+ K E AL+
Sbjct: 1431 DPRHYNAWYGVGMIYYKQEKFNLAEVHFRKALSINPSSSVLYCHVGVVQHAMRKSEAALA 1490
Query: 723 TLEKAVAL 746
T+ KA+ +
Sbjct: 1491 TINKAMLI 1498
>SB_23063| Best HMM Match : TPR_1 (HMM E-Value=3.1e-07)
Length = 374
Score = 41.5 bits (93), Expect = 7e-04
Identities = 25/77 (32%), Positives = 39/77 (50%)
Frame = +1
Query: 256 GMEIYSTCLWHLQREAQLSALAQELVELNRTNPIAWLVAGNCFSLHKERETALKFFRRAV 435
G+ +Y L L + A+ +E V P+ W GN +SL E A+ +F+RA+
Sbjct: 130 GLYLYGLVLKKLDLKKDALAVLEEAVN---AEPLHW---GNYYSLQGLHEKAIVYFQRAL 183
Query: 436 QLNPDAAYAHALLGHEY 486
+LN A L+GHE+
Sbjct: 184 KLNRQYTSAWTLMGHEF 200
>SB_25367| Best HMM Match : TPR_1 (HMM E-Value=2.4e-40)
Length = 553
Score = 39.1 bits (87), Expect = 0.004
Identities = 23/79 (29%), Positives = 38/79 (48%)
Frame = +1
Query: 274 TCLWHLQREAQLSALAQELVELNRTNPIAWLVAGNCFSLHKERETALKFFRRAVQLNPDA 453
+CL L++ L LA +LV+ +AW G + L ++ E A ++F +A +
Sbjct: 270 SCLVELKKSNDLFYLAHKLVDNYPQKAVAWYAVGCYYYLIEKYEQARRYFSKATGIERVY 329
Query: 454 AYAHALLGHEYAVAEETDK 510
A GH +AV E D+
Sbjct: 330 GPAWLGFGHSFAVEGEHDQ 348
>SB_38446| Best HMM Match : TPR_1 (HMM E-Value=9.5e-17)
Length = 147
Score = 36.7 bits (81), Expect = 0.020
Identities = 17/59 (28%), Positives = 32/59 (54%)
Frame = +3
Query: 567 FGIATVYARQERWKASEVHIRRALSIHPLSGVLRCQLGLAQSALGKMERALSTLEKAVA 743
F + + +++R+K +E H RAL ++P+ +R LG+ GK+ A +A+A
Sbjct: 63 FNLGNMLGQEKRFKEAEKHFLRALELNPVQPEIRGNLGVLYHRWGKLNEAEKCYMEALA 121
>SB_52347| Best HMM Match : TPR_1 (HMM E-Value=0)
Length = 687
Score = 36.7 bits (81), Expect = 0.020
Identities = 17/59 (28%), Positives = 32/59 (54%)
Frame = +3
Query: 567 FGIATVYARQERWKASEVHIRRALSIHPLSGVLRCQLGLAQSALGKMERALSTLEKAVA 743
F + + +++R+K +E H RAL ++P+ +R LG+ GK+ A +A+A
Sbjct: 603 FNLGNMLGQEKRFKEAEKHFLRALELNPVQPEIRGNLGVLYHRWGKLNEAEKCYMEALA 661
>SB_12855| Best HMM Match : TPR_2 (HMM E-Value=2.3e-12)
Length = 567
Score = 34.3 bits (75), Expect = 0.11
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = +1
Query: 280 LWHLQRE-AQLSALAQELVELNRTNPIAWLVAGNCFSLHKERETALKFFRRAVQLNPDAA 456
L+ L+ E +Q A+ ++ +R NP A + GNC E E A +F++ A +
Sbjct: 304 LYFLENELSQADKYAELAMQADRYNPAALVNKGNCLYSQGEYEKAREFYQEAYNVEATCT 363
Query: 457 YAHALLGHEYAVAEETDK 510
A LG+ Y A ET K
Sbjct: 364 EALFNLGN-YQQALETYK 380
>SB_23059| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 339
Score = 31.9 bits (69), Expect = 0.57
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +1
Query: 322 QELVELNRTNPIAWLVAGNCFSLHKERETALKFFRRAVQLNPDAAYA 462
+ +E++ + A +AG+ F + E A+ FRRA+QL+PD Y+
Sbjct: 84 ERALEIDPDHVEAIEMAGSVFLETGQPEKAVNCFRRAIQLSPDEGYS 130
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +1
Query: 292 QREAQLSALAQELVELNRTNPIAWLVAGNCFSLHKERETALKFFRRAV 435
+ E + S Q+ +E + TNP A+ V NC ++ E + F +
Sbjct: 182 EAEIKCSEYCQKAIEADPTNPEAYQVMANCLLSRQKIEVPMPHFEARI 229
>SB_28258| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1234
Score = 31.1 bits (67), Expect = 0.99
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +1
Query: 361 WLVAGNCFSLHKERETALKFFRRAVQLNPDAAYAH 465
+L+AGNCF++H R T KF RA +P + +
Sbjct: 805 FLLAGNCFNIHIPR-TGYKFHYRATPFSPGTRHLY 838
>SB_49858| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 927
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +1
Query: 331 VELNRTNPIAWLVAGNCFSLHKERETALKFFRRAVQLNPDAAYAHALLGHEYAVAEETDK 510
+E + +AW G F+ E A+ F +AVQL+P+ A+ LG+ A D+
Sbjct: 187 IETQPSFAVAWSNLGCVFNAQGEIWLAIHHFEKAVQLDPNFLDAYINLGNVLKEARIFDR 246
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/51 (29%), Positives = 29/51 (56%)
Frame = +1
Query: 322 QELVELNRTNPIAWLVAGNCFSLHKERETALKFFRRAVQLNPDAAYAHALL 474
+E + ++ T A+ GN ++ + A++ + RA+Q+NP A AH+ L
Sbjct: 388 KEAIRIHPTFADAFSNMGNLLKEMQDIQGAIQCYSRAIQINPAFADAHSNL 438
>SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1049
Score = 29.1 bits (62), Expect = 4.0
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Frame = +2
Query: 35 ALLSLMKEIGEAYKYLAFLDCKNAIKSFQELPPKQLASPWVQTMIARSHYELAQYEAAAK 214
AL +L+K G ++ + K A K F+E+ + PW QT+ + + +
Sbjct: 850 ALCNLVKHTGPLHE-CSIYQSKEAGKKFKEMLAAGRSRPWPQTLFKLTGEREMSADPLLE 908
Query: 215 IFSEIRK---QY---PNRTEGWK 265
F+ +RK Y N T GWK
Sbjct: 909 YFAPLRKWLFNYRIKNNYTLGWK 931
>SB_29526| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1120
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 140 LASPWVQTMIARSHYELAQY-EAAAKIFSEIRKQYPN 247
+A PWV+ +AR+H+ A Y +AAA+ S PN
Sbjct: 970 VARPWVRICLARAHFSQAVYVQAAAQHASAEEPFIPN 1006
>SB_15501| Best HMM Match : Not1 (HMM E-Value=4.6e-37)
Length = 509
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 140 LASPWVQTMIARSHYELAQYEAAAKIFSEIRKQY 241
+A PWV+ +AR+H+ A Y AA + +Y
Sbjct: 362 VARPWVRICLARAHFSQAVYVQAAAQHASAEGRY 395
>SB_6733| Best HMM Match : 7tm_1 (HMM E-Value=9.6e-36)
Length = 398
Score = 28.7 bits (61), Expect = 5.3
Identities = 20/85 (23%), Positives = 34/85 (40%)
Frame = +1
Query: 250 Y*GMEIYSTCLWHLQREAQLSALAQELVELNRTNPIAWLVAGNCFSLHKERETALKFFRR 429
Y I CL LQR + AL + +E TN +++ L + +
Sbjct: 275 YCARSISVACLSALQRHGECLALVNKRLEEESTNTDLYIMRARLHELFRNSTLCYYDVKD 334
Query: 430 AVQLNPDAAYAHALLGHEYAVAEET 504
A+ L+PD A L+ + A ++
Sbjct: 335 ALVLSPDNEEAKTLMNSLHKRANDS 359
>SB_59116| Best HMM Match : TPR_1 (HMM E-Value=6.7e-15)
Length = 884
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/71 (22%), Positives = 28/71 (39%)
Frame = +3
Query: 534 VSIDPRNYVAWFGIATVYARQERWKASEVHIRRALSIHPLSGVLRCQLGLAQSALGKMER 713
+ + P AW + V +R K +E ALS+ P S + +
Sbjct: 704 IKLRPHYVTAWVNLGLVLVNTDREKEAESAYNIALSLKPNSADANTNMAHLLRVTNRHME 763
Query: 714 ALSTLEKAVAL 746
A+ +KA++L
Sbjct: 764 AIEQYKKAISL 774
>SB_36896| Best HMM Match : MetJ (HMM E-Value=8.3)
Length = 235
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Frame = +2
Query: 8 IPPKNSNGVALLSLMKEIGEAYKYL-----AFLDCKNAIKSFQELP 130
+ P+ ++G+ LS M E + Y+ AFLD ++A+K E+P
Sbjct: 69 LSPEQASGITRLSKMAAFKEIHIYINSNKQAFLDWQDAVKPEDEVP 114
>SB_30764| Best HMM Match : Dynein_heavy (HMM E-Value=0)
Length = 1091
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Frame = +2
Query: 8 IPPKNSNGVALLSLMKEIGEAYKYL-----AFLDCKNAIKSFQELP 130
+ P+ ++G+ LS M E + Y+ AFLD ++A+K E+P
Sbjct: 352 LSPEQASGITRLSKMAAFKEIHIYINSNKQAFLDWQDAVKPEDEVP 397
>SB_11617| Best HMM Match : TPR_1 (HMM E-Value=0)
Length = 318
Score = 27.9 bits (59), Expect = 9.2
Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Frame = +3
Query: 561 AWFGIATVYARQERWKASEVHIRRALSIHPLSGVLRCQ------LGLAQSALGKMERALS 722
A+ GI V+ Q +++ + + + ALS+ +G CQ +G + GK E A++
Sbjct: 197 AYLGIGKVHRSQGKYEDTLNNYQHALSLFQKTGDESCQAKAYLGMGKVHRSHGKYEDAMN 256
Query: 723 TLEKAVAL 746
++A++L
Sbjct: 257 NYQQALSL 264
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,007,111
Number of Sequences: 59808
Number of extensions: 381494
Number of successful extensions: 912
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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