Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0786.Seq
(748 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY081955-1|AAL92523.1| 788|Caenorhabditis elegans MAT-1 protein. 87 9e-18
AC006708-13|AAF60415.1| 788|Caenorhabditis elegans Metaphase-to... 87 9e-18
U58763-2|AAK68876.1| 673|Caenorhabditis elegans Metaphase-to-an... 48 7e-06
U88181-2|AAB42303.1| 491|Caenorhabditis elegans Dnaj domain (pr... 34 0.093
U40060-5|AAA81143.2| 690|Caenorhabditis elegans Hypothetical pr... 32 0.38
U23513-6|AAB36864.1| 1168|Caenorhabditis elegans Hypothetical pr... 31 0.87
U41533-7|AAA83170.1| 337|Caenorhabditis elegans Small glutamine... 29 2.6
U97593-2|AAY86241.1| 195|Caenorhabditis elegans Hypothetical pr... 28 6.1
AC024765-5|AAF60527.3| 975|Caenorhabditis elegans Hypothetical ... 28 6.1
AL132898-4|CAC14407.3| 968|Caenorhabditis elegans Hypothetical ... 28 8.1
AF047658-5|AAC04416.3| 434|Caenorhabditis elegans Hypothetical ... 28 8.1
AC024882-17|AAF60937.1| 321|Caenorhabditis elegans Serpentine r... 28 8.1
>AY081955-1|AAL92523.1| 788|Caenorhabditis elegans MAT-1 protein.
Length = 788
Score = 87.4 bits (207), Expect = 9e-18
Identities = 41/85 (48%), Positives = 54/85 (63%)
Frame = +1
Query: 256 GMEIYSTCLWHLQREAQLSALAQELVELNRTNPIAWLVAGNCFSLHKERETALKFFRRAV 435
G E+ ST +WHLQ LSAL+Q L +R P +W AGNCFSL ++ A++ RA+
Sbjct: 529 GTELLSTSMWHLQDTHALSALSQILTTESRERPQSWCAAGNCFSLQRQHTQAIECMERAI 588
Query: 436 QLNPDAAYAHALLGHEYAVAEETDK 510
QL+ AYA+ LLGHE V +E DK
Sbjct: 589 QLDKRFAYAYTLLGHELIVQDELDK 613
Score = 48.8 bits (111), Expect = 4e-06
Identities = 19/69 (27%), Positives = 44/69 (63%)
Frame = +3
Query: 540 IDPRNYVAWFGIATVYARQERWKASEVHIRRALSIHPLSGVLRCQLGLAQSALGKMERAL 719
+ PR+Y AW+G+ V+ ++E+ + +I++A++I+P + + C L + G+++ AL
Sbjct: 624 LSPRDYRAWYGLGLVHLKKEQNLTALTNIQKAVNINPTNRAMLCTLSQIEQQRGQIDTAL 683
Query: 720 STLEKAVAL 746
+++A+ L
Sbjct: 684 VLIDRALTL 692
>AC006708-13|AAF60415.1| 788|Caenorhabditis elegans
Metaphase-to-anaphase transitiondefect protein 1,
isoform a protein.
Length = 788
Score = 87.4 bits (207), Expect = 9e-18
Identities = 41/85 (48%), Positives = 54/85 (63%)
Frame = +1
Query: 256 GMEIYSTCLWHLQREAQLSALAQELVELNRTNPIAWLVAGNCFSLHKERETALKFFRRAV 435
G E+ ST +WHLQ LSAL+Q L +R P +W AGNCFSL ++ A++ RA+
Sbjct: 529 GTELLSTSMWHLQDTHALSALSQILTTESRERPQSWCAAGNCFSLQRQHTQAIECMERAI 588
Query: 436 QLNPDAAYAHALLGHEYAVAEETDK 510
QL+ AYA+ LLGHE V +E DK
Sbjct: 589 QLDKRFAYAYTLLGHELIVQDELDK 613
Score = 48.8 bits (111), Expect = 4e-06
Identities = 19/69 (27%), Positives = 44/69 (63%)
Frame = +3
Query: 540 IDPRNYVAWFGIATVYARQERWKASEVHIRRALSIHPLSGVLRCQLGLAQSALGKMERAL 719
+ PR+Y AW+G+ V+ ++E+ + +I++A++I+P + + C L + G+++ AL
Sbjct: 624 LSPRDYRAWYGLGLVHLKKEQNLTALTNIQKAVNINPTNRAMLCTLSQIEQQRGQIDTAL 683
Query: 720 STLEKAVAL 746
+++A+ L
Sbjct: 684 VLIDRALTL 692
>U58763-2|AAK68876.1| 673|Caenorhabditis elegans
Metaphase-to-anaphase transitiondefect protein 3
protein.
Length = 673
Score = 48.0 bits (109), Expect = 7e-06
Identities = 23/76 (30%), Positives = 44/76 (57%)
Frame = +1
Query: 259 MEIYSTCLWHLQREAQLSALAQELVELNRTNPIAWLVAGNCFSLHKERETALKFFRRAVQ 438
+ + S L+ + +LS LA E+ ++++ + N ++ ++ E A+KFF+RA++
Sbjct: 369 LHLLSDSLYIRNDQKKLSTLAIEVYKVHKFRWETCCIVANYHAIRRDSEHAIKFFQRALR 428
Query: 439 LNPDAAYAHALLGHEY 486
LNP A L+GHE+
Sbjct: 429 LNPGLAALWVLIGHEF 444
>U88181-2|AAB42303.1| 491|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 7 protein.
Length = 491
Score = 34.3 bits (75), Expect = 0.093
Identities = 20/61 (32%), Positives = 30/61 (49%)
Frame = +3
Query: 534 VSIDPRNYVAWFGIATVYARQERWKASEVHIRRALSIHPLSGVLRCQLGLAQSALGKMER 713
+ +DP++Y A + AT Y R KA+ V + R L + P R Q G G++E
Sbjct: 53 IELDPKSYQAIYRRATTYLAMGRGKAAIVDLERVLELKPDFYGARIQRGNILLKQGELEA 112
Query: 714 A 716
A
Sbjct: 113 A 113
>U40060-5|AAA81143.2| 690|Caenorhabditis elegans Hypothetical
protein F38B6.6 protein.
Length = 690
Score = 32.3 bits (70), Expect = 0.38
Identities = 15/58 (25%), Positives = 30/58 (51%)
Frame = +3
Query: 573 IATVYARQERWKASEVHIRRALSIHPLSGVLRCQLGLAQSALGKMERALSTLEKAVAL 746
I + +A+ + A+E HI+ A+ ++P S + LG+ + + + A S +AL
Sbjct: 608 IGSCHAKHSNFTAAENHIKSAIDLNPTSVLFHANLGILYQRMSRHKEAESQYRIVLAL 665
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/67 (25%), Positives = 29/67 (43%)
Frame = +1
Query: 286 HLQREAQLSALAQELVELNRTNPIAWLVAGNCFSLHKERETALKFFRRAVQLNPDAAYAH 465
HL + +Q+ L+ + + + G+C + H A + A+ LNP + H
Sbjct: 580 HLSQCSQVIDLSYQALSSVPNESRVHMQIGSCHAKHSNFTAAENHIKSAIDLNPTSVLFH 639
Query: 466 ALLGHEY 486
A LG Y
Sbjct: 640 ANLGILY 646
>U23513-6|AAB36864.1| 1168|Caenorhabditis elegans Hypothetical
protein D2021.1 protein.
Length = 1168
Score = 31.1 bits (67), Expect = 0.87
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +1
Query: 331 VELNRTNPIAWLVAGNCFSLHKERETALKFFRRAVQLNPDA 453
+ELN T+ AW G + + + + AL+ F+ A+ NP A
Sbjct: 371 IELNSTHSAAWTDLGELYEKNAQYQDALECFKNAMLNNPVA 411
>U41533-7|AAA83170.1| 337|Caenorhabditis elegans Small
glutamine-rich tetratricorepeat protein protein 1
protein.
Length = 337
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/66 (28%), Positives = 31/66 (46%)
Frame = +3
Query: 549 RNYVAWFGIATVYARQERWKASEVHIRRALSIHPLSGVLRCQLGLAQSALGKMERALSTL 728
R+ V + A Y R E++ + R AL++ P ++GLA S + E A
Sbjct: 136 RDPVYFCNRAAAYCRLEQYDLAIQDCRTALALDPSYSKAWGRMGLAYSCQNRYEHAAEAY 195
Query: 729 EKAVAL 746
+KA+ L
Sbjct: 196 KKALEL 201
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/59 (23%), Positives = 30/59 (50%)
Frame = +3
Query: 534 VSIDPRNYVAWFGIATVYARQERWKASEVHIRRALSIHPLSGVLRCQLGLAQSALGKME 710
+++DP AW + Y+ Q R++ + ++AL + P + L +A+ L ++E
Sbjct: 165 LALDPSYSKAWGRMGLAYSCQNRYEHAAEAYKKALELEPNQESYKNNLKIAEDKLKELE 223
>U97593-2|AAY86241.1| 195|Caenorhabditis elegans Hypothetical
protein C46G7.5 protein.
Length = 195
Score = 28.3 bits (60), Expect = 6.1
Identities = 16/31 (51%), Positives = 18/31 (58%)
Frame = +2
Query: 566 VWYSYSLRTTRTLESIRSSHTPCSQYTSTFR 658
+W S S R R L SIRS T CS+ TFR
Sbjct: 89 LWMSTSPRL-RELMSIRSRRTNCSELCRTFR 118
>AC024765-5|AAF60527.3| 975|Caenorhabditis elegans Hypothetical
protein Y39A3CR.3 protein.
Length = 975
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/71 (23%), Positives = 33/71 (46%)
Frame = +3
Query: 534 VSIDPRNYVAWFGIATVYARQERWKASEVHIRRALSIHPLSGVLRCQLGLAQSALGKMER 713
+++ P ++ + +A +Y + K +E +R + + PL+ QLG + G +R
Sbjct: 884 LALAPGHFQSMSALAKLYEEEGNQKMAEHMLREMVRVDPLNCEWWQQLGCSLMKRGDSDR 943
Query: 714 ALSTLEKAVAL 746
A L A L
Sbjct: 944 ATECLTAAAQL 954
>AL132898-4|CAC14407.3| 968|Caenorhabditis elegans Hypothetical
protein Y59A8B.6 protein.
Length = 968
Score = 27.9 bits (59), Expect = 8.1
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +1
Query: 349 NPIAWLVAGNCFSLHKERETALKFFRRAVQLNPDAAYAHA-LLGHEYAVAEETDK 510
NP + A F ++ + A ++F RAV L+PD A A L E +E D+
Sbjct: 867 NPHVLIAAARLFWSERKIKKAREWFVRAVNLDPDNGDAFANFLAFEQIHGKEEDR 921
>AF047658-5|AAC04416.3| 434|Caenorhabditis elegans Hypothetical
protein K03H6.5 protein.
Length = 434
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = -3
Query: 200 HIEPIHNGYVRSWFVPKVKPIVLEVTLERILLHFYSLKMQDIY 72
H +P H G + +WF VL V+LER+L+ + + D++
Sbjct: 112 HSKP-HFGALSNWFSAAAIWFVLAVSLERLLIIKFPFRSLDVH 153
>AC024882-17|AAF60937.1| 321|Caenorhabditis elegans Serpentine
receptor, class z protein28 protein.
Length = 321
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = -3
Query: 158 VPKVKPIVLEVTLERILLHFYS-LKMQDIYKLLLFLS*DSTMLLHLNSLEV 9
+P + I V +R + FYS LK + I K+LLFL+ D+ ++ + + V
Sbjct: 267 IPLINSISYIVCNKRNVKAFYSSLKPKTIVKVLLFLNTDAKIIPQIGEINV 317
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,904,820
Number of Sequences: 27780
Number of extensions: 307911
Number of successful extensions: 790
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -