Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0786.Seq
         (748 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   5.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   7.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   7.0  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   9.3  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/41 (24%), Positives = 23/41 (56%)
 Frame = +2

Query: 5   TIPPKNSNGVALLSLMKEIGEAYKYLAFLDCKNAIKSFQEL 127
           TIP  +    A++ ++ ++  +Y  + + +    IK+F+EL
Sbjct: 260 TIPSDHYQVKAMVEIVMKMKWSYVSIIYEESNYGIKAFEEL 300


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 430  AVQLNPDAAYAHALLGHEYAVAE 498
            A  L+P+    H+ + HE+A+ E
Sbjct: 1727 AAGLHPNNTLLHSFMYHEHAMTE 1749


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 430  AVQLNPDAAYAHALLGHEYAVAE 498
            A  L+P+    H+ + HE+A+ E
Sbjct: 1723 AAGLHPNNTLLHSFMYHEHAMTE 1745


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 322 QELVELNRTNPIAW 363
           +E +EL+R+NP  W
Sbjct: 559 REGIELSRSNPTPW 572


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,660
Number of Sequences: 438
Number of extensions: 3927
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)