Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0786.Seq
(748 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g20000.1 68415.m02338 cell division cycle family protein / CD... 105 3e-23
At3g16320.1 68416.m02061 cell division cycle family protein / CD... 102 2e-22
At3g48150.1 68416.m05251 cell division cycle family protein / CD... 56 2e-08
At2g33760.1 68415.m04140 pentatricopeptide (PPR) repeat-containi... 34 0.087
At3g03580.1 68416.m00361 pentatricopeptide (PPR) repeat-containi... 34 0.12
At2g41080.1 68415.m05074 pentatricopeptide (PPR) repeat-containi... 33 0.20
At3g04240.1 68416.m00448 O-linked N-acetyl glucosamine transfera... 33 0.27
At3g11540.1 68416.m01407 gibberellin signal transduction protein... 31 0.61
At2g06210.2 68415.m00683 phosphoprotein-related low similarity t... 31 0.81
At2g06210.1 68415.m00684 phosphoprotein-related low similarity t... 31 0.81
At1g76630.1 68414.m08916 tetratricopeptide repeat (TPR)-containi... 30 1.4
At5g37130.1 68418.m04457 tetratricopeptide repeat (TPR)-containi... 30 1.9
At4g37460.1 68417.m05302 tetratricopeptide repeat (TPR)-containi... 29 2.5
At1g80410.1 68414.m09413 acetyltransferase-related low similarit... 29 2.5
At1g50270.1 68414.m05636 pentatricopeptide (PPR) repeat-containi... 29 3.3
At1g11290.1 68414.m01297 pentatricopeptide (PPR) repeat-containi... 29 3.3
At4g14820.1 68417.m02279 pentatricopeptide (PPR) repeat-containi... 29 4.3
At4g13650.1 68417.m02123 pentatricopeptide (PPR) repeat-containi... 29 4.3
At3g48520.1 68416.m05296 cytochrome P450 family protein similar ... 29 4.3
At1g67310.1 68414.m07661 calmodulin-binding protein similar to a... 29 4.3
At1g33350.1 68414.m04127 pentatricopeptide (PPR) repeat-containi... 29 4.3
At1g04530.1 68414.m00445 expressed protein 28 5.7
At4g30480.2 68417.m04328 tetratricopeptide repeat (TPR)-containi... 28 7.6
At4g30480.1 68417.m04327 tetratricopeptide repeat (TPR)-containi... 28 7.6
At3g15930.1 68416.m02014 pentatricopeptide (PPR) repeat-containi... 28 7.6
At3g17040.1 68416.m02175 tetratricopeptide repeat (TPR)-containi... 27 10.0
At3g14730.1 68416.m01862 pentatricopeptide (PPR) repeat-containi... 27 10.0
At3g13620.1 68416.m01714 amino acid permease family protein weak... 27 10.0
At2g31990.1 68415.m03908 exostosin family protein contains Pfam ... 27 10.0
At2g02400.1 68415.m00180 cinnamoyl-CoA reductase family similar ... 27 10.0
At1g18700.1 68414.m02333 DNAJ heat shock N-terminal domain-conta... 27 10.0
>At2g20000.1 68415.m02338 cell division cycle family protein / CDC
family protein low similarity to SP|P30260|CC27_HUMAN
Protein CDC27Hs (Cell division cycle protein 27 homolog)
Homo sapiens; contains Pfam profile PF00515: TPR Domain
Length = 744
Score = 105 bits (252), Expect = 3e-23
Identities = 48/82 (58%), Positives = 59/82 (71%)
Frame = +1
Query: 256 GMEIYSTCLWHLQREAQLSALAQELVELNRTNPIAWLVAGNCFSLHKERETALKFFRRAV 435
GM+IYST L+HL+ + +LS LAQEL+ +R P +W GNC+SL K+ ETALK F RAV
Sbjct: 486 GMDIYSTVLYHLKEDMKLSYLAQELISTDRLAPQSWCAMGNCYSLQKDHETALKNFLRAV 545
Query: 436 QLNPDAAYAHALLGHEYAVAEE 501
QLNP AYAH L GHEY E+
Sbjct: 546 QLNPRFAYAHTLCGHEYTTLED 567
Score = 62.1 bits (144), Expect = 4e-10
Identities = 28/67 (41%), Positives = 42/67 (62%)
Frame = +3
Query: 540 IDPRNYVAWFGIATVYARQERWKASEVHIRRALSIHPLSGVLRCQLGLAQSALGKMERAL 719
+D R+Y AW+G+ +Y RQE+ + SE H R A I+P S V+ LG + AL + E AL
Sbjct: 581 VDTRHYNAWYGLGMIYLRQEKLEFSEHHFRMAFLINPSSSVIMSYLGTSLHALKRSEEAL 640
Query: 720 STLEKAV 740
+E+A+
Sbjct: 641 EIMEQAI 647
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/74 (28%), Positives = 39/74 (52%)
Frame = +2
Query: 38 LLSLMKEIGEAYKYLAFLDCKNAIKSFQELPPKQLASPWVQTMIARSHYELAQYEAAAKI 217
+L+L++ +GE + C+ A+ ++ +LP K + WV + + ++++EL Y A K
Sbjct: 413 ILNLLRTLGEGCRLSYMYRCQEALDTYMKLPHKHYNTGWVLSQVGKAYFELIDYLEAEKA 472
Query: 218 FSEIRKQYPNRTEG 259
F R P EG
Sbjct: 473 FRLARLASPYCLEG 486
>At3g16320.1 68416.m02061 cell division cycle family protein / CDC
family protein similar to SP|P30260|CC27_HUMAN Protein
CDC27Hs (Cell division cycle protein 27 homolog) Homo
sapiens, C-terminus similar to C-term of cell division
control protein 27 SP:P38042 (Saccharomyces cerevisiae);
contains Pfam profile PF00515 TPR Domain
Length = 727
Score = 102 bits (245), Expect = 2e-22
Identities = 44/82 (53%), Positives = 59/82 (71%)
Frame = +1
Query: 256 GMEIYSTCLWHLQREAQLSALAQELVELNRTNPIAWLVAGNCFSLHKERETALKFFRRAV 435
GM+ YST L+HL+ E +L LAQEL+ ++R +P +W GNC+SL K+ +TALK F+RA+
Sbjct: 467 GMDTYSTVLYHLKEEMRLGYLAQELISVDRLSPESWCAVGNCYSLRKDHDTALKMFQRAI 526
Query: 436 QLNPDAAYAHALLGHEYAVAEE 501
QLN YAH L GHE+A EE
Sbjct: 527 QLNERFTYAHTLCGHEFAALEE 548
Score = 57.6 bits (133), Expect = 8e-09
Identities = 26/69 (37%), Positives = 42/69 (60%)
Frame = +3
Query: 534 VSIDPRNYVAWFGIATVYARQERWKASEVHIRRALSIHPLSGVLRCQLGLAQSALGKMER 713
+ ID R+Y AW+G+ Y RQE+++ ++ + AL I+P S V+ C G+A + +
Sbjct: 560 LGIDTRHYNAWYGLGMTYLRQEKFEFAQHQFQLALQINPRSSVIMCYYGIALHESKRNDE 619
Query: 714 ALSTLEKAV 740
AL +EKAV
Sbjct: 620 ALMMMEKAV 628
Score = 54.0 bits (124), Expect = 1e-07
Identities = 23/74 (31%), Positives = 44/74 (59%)
Frame = +2
Query: 38 LLSLMKEIGEAYKYLAFLDCKNAIKSFQELPPKQLASPWVQTMIARSHYELAQYEAAAKI 217
+LSL+K +G+ +++L C+ A+ ++Q+L KQ + WV + ++++EL Y A
Sbjct: 394 VLSLLKILGDGHRHLHMYKCQEALLAYQKLSQKQYNTHWVLMQVGKAYFELQDYFNADSS 453
Query: 218 FSEIRKQYPNRTEG 259
F+ ++YP EG
Sbjct: 454 FTLAHQKYPYALEG 467
>At3g48150.1 68416.m05251 cell division cycle family protein / CDC
family protein similar to cell division cycle protein 23
[Homo sapiens] GI:3283051, anaphase-promoting complex
subunit 8 [Homo sapiens] GI:6180017; contains Pfam
profile PF00515: TPR Domain
Length = 579
Score = 56.4 bits (130), Expect = 2e-08
Identities = 29/82 (35%), Positives = 47/82 (57%)
Frame = +1
Query: 259 MEIYSTCLWHLQREAQLSALAQELVELNRTNPIAWLVAGNCFSLHKERETALKFFRRAVQ 438
M++YS L+ + A LS LA ++ ++ P + + GN +SL + E A+ +FRRA++
Sbjct: 308 MDLYSNVLYAKEACAALSYLAHKVFLTDKYRPESCCIIGNYYSLKGQHEKAVMYFRRALK 367
Query: 439 LNPDAAYAHALLGHEYAVAEET 504
LN A L+GHEY + T
Sbjct: 368 LNKKYLSAWTLMGHEYVEMKNT 389
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +1
Query: 331 VELNRTNPIAWLVAGNCFSLHKERETALKFFRRAVQLNPDAAYAHALLGHEY 486
++LN+ AW + G+ + K A+ +RRAV +NP A LG Y
Sbjct: 366 LKLNKKYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPTDYRAWYGLGQAY 417
>At2g33760.1 68415.m04140 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 583
Score = 34.3 bits (75), Expect = 0.087
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = +1
Query: 346 TNPIAWLVAGNCFSLHKERETALKFFRRAVQLNPDAAYAHALLGHEYAVAEETDK 510
T P W +H+ + ++ +R + L PD H +L + YA++ +TD+
Sbjct: 379 TAPALWTAMLGACKMHRNYDLGVEIAKRLIALEPDNPGHHVMLSNIYALSGKTDE 433
>At3g03580.1 68416.m00361 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 882
Score = 33.9 bits (74), Expect = 0.12
Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 2/99 (2%)
Frame = +1
Query: 220 FRNKKTVSKSY*GMEIYSTCLWHLQREAQLSALAQELVELNRTNPIA--WLVAGNCFSLH 393
F KT K +E Y+ C+ L +Q + A+E ++ P A W
Sbjct: 633 FEKMKTHYKIDPMIEHYA-CVVDLLSRSQKISKAEEFIQAMPIKPDASIWASVLRACRTS 691
Query: 394 KERETALKFFRRAVQLNPDAAYAHALLGHEYAVAEETDK 510
+ ETA + RR ++LNPD L + YA + DK
Sbjct: 692 GDMETAERVSRRIIELNPDDPGYSILASNAYAALRKWDK 730
>At2g41080.1 68415.m05074 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 565
Score = 33.1 bits (72), Expect = 0.20
Identities = 20/83 (24%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Frame = +1
Query: 256 GMEIYSTCLWHLQREAQLSALAQELVELN--RTNPIAWLVAGNCFSLHKERETALKFFRR 429
G++ Y TC+ L A A+ ++ +T+ + W + ++HK E A + F+
Sbjct: 329 GLKHY-TCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFKE 387
Query: 430 AVQLNPDAAYAHALLGHEYAVAE 498
+Q++P+ + + LL + +A A+
Sbjct: 388 ILQIDPNDSACYVLLANVHASAK 410
>At3g04240.1 68416.m00448 O-linked N-acetyl glucosamine transferase,
putative similar to O-GlcNAc transferase, Homo sapiens
[SP|O15294], Rattus norvegicus [SP|P56558]; contains
Pfam profile PF00515: TPR Domain; identical to cDNA
GI:18139886
Length = 977
Score = 32.7 bits (71), Expect = 0.27
Identities = 20/71 (28%), Positives = 33/71 (46%)
Frame = +3
Query: 534 VSIDPRNYVAWFGIATVYARQERWKASEVHIRRALSIHPLSGVLRCQLGLAQSALGKMER 713
+ + P AW +A+ Y R+ R + ++ALS++PL LG A G +
Sbjct: 148 IELRPNFADAWSNLASAYMRKGRLSEATQCCQQALSLNPLLVDAHSNLGNLMKAQGLIHE 207
Query: 714 ALSTLEKAVAL 746
A S +AV +
Sbjct: 208 AYSCYLEAVRI 218
>At3g11540.1 68416.m01407 gibberellin signal transduction protein
(SPINDLY) identical to spindly GB:AAC49446 (GI:1589778)
[Arabidopsis thaliana]; contains Pfam profile PF00515
TPR Domain
Length = 914
Score = 31.5 bits (68), Expect = 0.61
Identities = 15/71 (21%), Positives = 33/71 (46%)
Frame = +3
Query: 534 VSIDPRNYVAWFGIATVYARQERWKASEVHIRRALSIHPLSGVLRCQLGLAQSALGKMER 713
+ IDP A++ + VY+ ++ + +A P+ C +G+ G +E
Sbjct: 179 LKIDPHYAPAYYNLGVVYSEMMQYDNALSCYEKAALERPMYAEAYCNMGVIYKNRGDLEM 238
Query: 714 ALSTLEKAVAL 746
A++ E+ +A+
Sbjct: 239 AITCYERCLAV 249
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/45 (40%), Positives = 25/45 (55%)
Frame = +3
Query: 606 KASEVHIRRALSIHPLSGVLRCQLGLAQSALGKMERALSTLEKAV 740
KA E + + ALSI P LG+ + GKM+ A S +EKA+
Sbjct: 347 KAVECY-QMALSIKPNFAQSLNNLGVVYTVQGKMDAAASMIEKAI 390
>At2g06210.2 68415.m00683 phosphoprotein-related low similarity to
phosphoprotein from Mus musculus GI:1236239; contains
Pfam profile PF00515 TPR Domain
Length = 852
Score = 31.1 bits (67), Expect = 0.81
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +3
Query: 543 DPRNYV-AWFGIATVYARQERWKASEVHIRRALSIHPLSGVLRCQLGLAQSALGKMERAL 719
+P +V +FG+ V + K S + + L ++P + LG + LG+ E+AL
Sbjct: 99 NPHEFVFPYFGLGQVQLKLGELKGSVFNFEKVLEVYPDNCETLKALGHLYTQLGQNEKAL 158
Query: 720 STLEKAVAL 746
+ KA L
Sbjct: 159 EYMRKATKL 167
>At2g06210.1 68415.m00684 phosphoprotein-related low similarity to
phosphoprotein from Mus musculus GI:1236239; contains
Pfam profile PF00515 TPR Domain
Length = 1064
Score = 31.1 bits (67), Expect = 0.81
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +3
Query: 543 DPRNYV-AWFGIATVYARQERWKASEVHIRRALSIHPLSGVLRCQLGLAQSALGKMERAL 719
+P +V +FG+ V + K S + + L ++P + LG + LG+ E+AL
Sbjct: 311 NPHEFVFPYFGLGQVQLKLGELKGSVFNFEKVLEVYPDNCETLKALGHLYTQLGQNEKAL 370
Query: 720 STLEKAVAL 746
+ KA L
Sbjct: 371 EYMRKATKL 379
>At1g76630.1 68414.m08916 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile: PF00515 TPR Domain (5
copies)
Length = 1064
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/67 (23%), Positives = 31/67 (46%)
Frame = +3
Query: 546 PRNYVAWFGIATVYARQERWKASEVHIRRALSIHPLSGVLRCQLGLAQSALGKMERALST 725
P+ + A+ + + Q++W + ++ A+ +P L LGLA LG A+
Sbjct: 118 PKAFWAFCRLGYIQLHQKKWSEAVQSLQHAIRGYPTMSDLWEALGLAYQRLGMFTAAIKA 177
Query: 726 LEKAVAL 746
+A+ L
Sbjct: 178 YGRAIEL 184
>At5g37130.1 68418.m04457 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515 TPR Domain
Length = 856
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/71 (21%), Positives = 36/71 (50%)
Frame = +3
Query: 534 VSIDPRNYVAWFGIATVYARQERWKASEVHIRRALSIHPLSGVLRCQLGLAQSALGKMER 713
V +DP N++AW IA+++ +++ K S + + L ++ S + +G ++
Sbjct: 606 VHLDPDNWLAWNNIASLHMIKKKSKESFIAFKEVLKLNRDSWQIWENFSHVAMDVGNTDQ 665
Query: 714 ALSTLEKAVAL 746
A +++ + L
Sbjct: 666 AFEAIQQIMRL 676
>At4g37460.1 68417.m05302 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515: TPR Domain
Length = 883
Score = 29.5 bits (63), Expect = 2.5
Identities = 18/66 (27%), Positives = 32/66 (48%)
Frame = +3
Query: 543 DPRNYVAWFGIATVYARQERWKASEVHIRRALSIHPLSGVLRCQLGLAQSALGKMERALS 722
+P A G T YA Q +++ +A+ +P + + G A++ALG+ A+
Sbjct: 327 EPTYPEALIGRGTAYAFQRELESAIADFTKAIQSNPAASEAWKRRGQARAALGEYVEAVE 386
Query: 723 TLEKAV 740
L KA+
Sbjct: 387 DLTKAL 392
>At1g80410.1 68414.m09413 acetyltransferase-related low similarity
to acetyltransferase Tubedown-1 [Mus musculus]
GI:8497318, N-TERMINAL ACETYLTRANSFERASE GB:P12945 from
(Saccharomyces cerevisiae); contains Pfam profile
PF00515 TPR Domain
Length = 897
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Frame = +1
Query: 319 AQELVELNRTNPI----AWLVAGNCFSLHKERETALKFFRRAVQLNPD 450
A ELV L N I W V G + +E A+K +R A++++PD
Sbjct: 62 AYELVRLGVKNDIKSHVCWHVLGLLYRSDREYREAIKCYRNALRIDPD 109
>At1g50270.1 68414.m05636 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 596
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/62 (25%), Positives = 31/62 (50%)
Frame = +1
Query: 325 ELVELNRTNPIAWLVAGNCFSLHKERETALKFFRRAVQLNPDAAYAHALLGHEYAVAEET 504
E + + TN + + G+C LHK+ E R ++L P + + LL + Y+ ++
Sbjct: 467 ERMPMEPTNVVWGALFGSCL-LHKDYELGKYAASRVIKLQPSHSGRYTLLANLYSESQNW 525
Query: 505 DK 510
D+
Sbjct: 526 DE 527
>At1g11290.1 68414.m01297 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 809
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = +1
Query: 373 GNCFSLHKERETALKFFRRAVQLNPDAAYAHALLGHEYAVAEETDK 510
G C +HK A K R +LNPD H LL + Y A +K
Sbjct: 615 GAC-QIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEK 659
>At4g14820.1 68417.m02279 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 722
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +1
Query: 307 LSALAQELVELNRTNPIAWLVAGNCFSLHKERETALKFFRRAVQLN 444
L A ++ R N ++W N S+H E AL F R Q N
Sbjct: 395 LDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQEN 440
>At4g13650.1 68417.m02123 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 1064
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = +1
Query: 277 CLWHLQREAQLSALAQELVELNRTNP--IAWLVAGNCFSLHKERETALKFFRRAVQLNPD 450
C+ + A L + A+E ++ P + W + +HK E ++L P+
Sbjct: 834 CVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPE 893
Query: 451 AAYAHALLGHEYAVAEETD 507
+ + LL + YAV+++ D
Sbjct: 894 DSATYVLLSNLYAVSKKWD 912
>At3g48520.1 68416.m05296 cytochrome P450 family protein similar to
Cytochrome P450 94A1 (P450-dependent fatty acid
omega-hydroxylase) (SP:O81117) {Vicia sativa}; contains
Pfam profile: PF00067 cytochrome P450
Length = 506
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +1
Query: 307 LSALAQELVELNRT-NPIAWLVAGNCFSLHKERETALKFFRRAVQLNPDAAYAHALLGHE 483
LS+ + + V+ N T P ++ + G+ S +K R L+++ ++L+P LLG+
Sbjct: 20 LSSSSTKKVQENTTYGPPSYPLIGSILSFNKNRHRLLQWYTELLRLSPSQTILVPLLGNR 79
Query: 484 YAV 492
+
Sbjct: 80 RTI 82
>At1g67310.1 68414.m07661 calmodulin-binding protein similar to
anther ethylene-upregulated calmodulin-binding protein
ER1 GI:11612392 from[Nicotiana tabacum]
Length = 1035
Score = 28.7 bits (61), Expect = 4.3
Identities = 19/75 (25%), Positives = 33/75 (44%)
Frame = +1
Query: 283 WHLQREAQLSALAQELVELNRTNPIAWLVAGNCFSLHKERETALKFFRRAVQLNPDAAYA 462
W +R+ + A A E +++ + NC+ H E++ FRR + D Y
Sbjct: 117 WRRKRDGRAIAEAHERLKVGNAEAL------NCYYAHGEQDPT---FRRRIYWMLDPEYE 167
Query: 463 HALLGHEYAVAEETD 507
H +L H V+E +
Sbjct: 168 HIVLVHYRDVSEREE 182
>At1g33350.1 68414.m04127 pentatricopeptide (PPR) repeat-containing
protein contains multiple Pfam domains: PF01535: PPR
repeat
Length = 538
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 358 AWLVAGNCFSLHKERETALKFFRRAVQLN 444
AW NCF+LH E A+ F ++LN
Sbjct: 328 AWNSMINCFALHGRSEEAIAVFEEMMKLN 356
>At1g04530.1 68414.m00445 expressed protein
Length = 310
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 5/33 (15%)
Frame = +1
Query: 388 LHKERETALKFFRRAVQLNPD-----AAYAHAL 471
LH++ A+ +F RAVQ +PD AAYA L
Sbjct: 183 LHQDEAKAMSYFERAVQASPDDSIVLAAYASFL 215
>At4g30480.2 68417.m04328 tetratricopeptide repeat (TPR)-containing
protein similar to SP|Q99614 Tetratricopeptide repeat
protein 1 {Homo sapiens}; contains Pfam profile PF00515:
TPR Domain
Length = 277
Score = 27.9 bits (59), Expect = 7.6
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +1
Query: 289 LQREAQLSALAQELVELNRTNPIAWLVAGNCFSLHKERETALKFFRRAVQLNP 447
L + A L QEL E I +L G CF + E +K +A++LNP
Sbjct: 125 LSKYAFALELVQELPESIELRSICYLNRGVCFLKLGKCEETIKECTKALELNP 177
>At4g30480.1 68417.m04327 tetratricopeptide repeat (TPR)-containing
protein similar to SP|Q99614 Tetratricopeptide repeat
protein 1 {Homo sapiens}; contains Pfam profile PF00515:
TPR Domain
Length = 208
Score = 27.9 bits (59), Expect = 7.6
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +1
Query: 289 LQREAQLSALAQELVELNRTNPIAWLVAGNCFSLHKERETALKFFRRAVQLNP 447
L + A L QEL E I +L G CF + E +K +A++LNP
Sbjct: 125 LSKYAFALELVQELPESIELRSICYLNRGVCFLKLGKCEETIKECTKALELNP 177
>At3g15930.1 68416.m02014 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 687
Score = 27.9 bits (59), Expect = 7.6
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Frame = +1
Query: 265 IYSTCLWHLQREAQLSALAQELVELNRTNP--IAWLVAGNCFSLHKERETALKFFRRAVQ 438
++ C+ + A L A E++ NP I W LH + A ++ ++
Sbjct: 506 VHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILE 565
Query: 439 LNPDAAYAHALLGHEYA 489
L PD +ALL + YA
Sbjct: 566 LEPDNGAVYALLCNIYA 582
>At3g17040.1 68416.m02175 tetratricopeptide repeat (TPR)-containing
protein low similarity to SP|Q9FNS4 PsbB mRNA maturation
factor Mbb1, chloroplast precursor {Chlamydomonas
reinhardtii}; contains Pfam profile: PF00515: TPR Domain
Length = 652
Score = 27.5 bits (58), Expect = 10.0
Identities = 16/66 (24%), Positives = 31/66 (46%)
Frame = +3
Query: 549 RNYVAWFGIATVYARQERWKASEVHIRRALSIHPLSGVLRCQLGLAQSALGKMERALSTL 728
R+ +W A + +QER+ A+ +A+ P + G+ ++ +G +ER L
Sbjct: 337 RSCASWLAWAQLEIQQERYPAARKLFEKAVQASPKNRFAWHVWGVFEAGVGNVERGRKLL 396
Query: 729 EKAVAL 746
+ AL
Sbjct: 397 KIGHAL 402
>At3g14730.1 68416.m01862 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 653
Score = 27.5 bits (58), Expect = 10.0
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = +1
Query: 349 NPIAWLVAGNCFSLHKERETALKFFRRAVQLNPDAAYAHALLGHEYAVA 495
NP+ W + LH ++ AL +R +L P+ + L+ + Y A
Sbjct: 535 NPVVWRSILSSCRLHGNKDLALVAGKRLHELEPEHCGGYVLMSNVYVEA 583
>At3g13620.1 68416.m01714 amino acid permease family protein weak
similarity to SP|Q9WTR6 Cystine/glutamate transporter
(Amino acid transport system xc-) {Mus musculus};
contains Pfam profile PF00324: Amino acid permease
Length = 478
Score = 27.5 bits (58), Expect = 10.0
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 268 YSTCLWHLQREAQLSALAQELVELNRTNPIAWLVA 372
++T W+L +S LA E+ E +T P+A L+A
Sbjct: 213 FNTLFWNLNFWDNVSTLAGEVDEPQKTFPLALLIA 247
>At2g31990.1 68415.m03908 exostosin family protein contains Pfam
profile: PF03016 Exostosin family
Length = 479
Score = 27.5 bits (58), Expect = 10.0
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 11 PPKNSNGVALLSLMKEIGEAYKYLAFLDC 97
P +N NGV ++K+ + K FLDC
Sbjct: 298 PSRNQNGVVRTEVIKQCKSSSKTCRFLDC 326
>At2g02400.1 68415.m00180 cinnamoyl-CoA reductase family similar to
cinnamoyl-CoA reductase from Pinus taeda [GI:17978649],
Eucalyptus gunnii [GI:2058311]
Length = 318
Score = 27.5 bits (58), Expect = 10.0
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +3
Query: 564 WFGIATVYARQERWKASEVHIRRALSIHP 650
W+ I+ A + W+ SE H ++IHP
Sbjct: 157 WYPISKTLAEKAAWEFSEKHGTNIVTIHP 185
>At1g18700.1 68414.m02333 DNAJ heat shock N-terminal
domain-containing protein low similarity to SP|Q9QYI8
DnaJ homolog subfamily B member 7 Mus musculus; contains
Pfam profile PF00226 DnaJ domain
Length = 700
Score = 27.5 bits (58), Expect = 10.0
Identities = 18/82 (21%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Frame = +2
Query: 5 TIPPKNSN--GVALLSLMKEIGEAYKYLAFL-DCKNAIKSFQELPPKQLASPWVQTMIAR 175
+ PP + + GV + S + ++ +AY+ +A D + + + Q A + ++ +
Sbjct: 39 SFPPSHYDVLGVKMYSSVDDVKDAYQTVASKWDSGSGVSLPADFVKIQYAYELLTNLVWK 98
Query: 176 SHYELAQYEAAAKIFSEIRKQY 241
Y+L + + I E+ KQY
Sbjct: 99 RDYDLYAIDESVHIIEELEKQY 120
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,923,493
Number of Sequences: 28952
Number of extensions: 279368
Number of successful extensions: 819
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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