Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0785.Seq
(733 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21C3.07c |||actin binding methyltransferase |Schizosaccharom... 58 1e-09
SPBC3H7.11 |||actin binding methyltransferase |Schizosaccharomyc... 50 3e-07
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 27 2.1
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 26 4.8
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p... 26 4.8
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 25 8.4
SPBC27B12.13 |tom40|SPBC8D2.22|mitochondrial TOM complex subunit... 25 8.4
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po... 25 8.4
>SPBC21C3.07c |||actin binding methyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 281
Score = 58.4 bits (135), Expect = 1e-09
Identities = 28/74 (37%), Positives = 44/74 (59%)
Frame = +1
Query: 511 IFPILQYSQDPKLFVYGCDFSSKAIEIMKQNELYNTDRCKVFVLGATEADWDVPFQENSI 690
I+PIL+ +++ L ++ D+S KAI+++KQN LY+ C V +D +E SI
Sbjct: 132 IWPILKENKNSNLKIFAVDYSEKAIDVVKQNPLYDAKFCSASVWDLAGSDLLRSIEEASI 191
Query: 691 DIVVLIFVLSAIDP 732
D + LIF SA+ P
Sbjct: 192 DAITLIFCFSALSP 205
Score = 40.7 bits (91), Expect = 2e-04
Identities = 14/26 (53%), Positives = 20/26 (76%)
Frame = +3
Query: 123 FGNRYLENAEEVFKHNSWDNVEWDED 200
FG R L E+VF+ N+WD+VEWD++
Sbjct: 27 FGGRLLTEEEDVFEQNAWDHVEWDDE 52
Score = 40.3 bits (90), Expect = 3e-04
Identities = 13/29 (44%), Positives = 21/29 (72%)
Frame = +2
Query: 287 DKHWDAFYDIHQNRFFKDRHWLFTEFPEL 373
+++WD FY ++ +FF +R W+ EFPEL
Sbjct: 80 ERYWDQFYGKNEGKFFMNRRWIAQEFPEL 108
>SPBC3H7.11 |||actin binding methyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 248
Score = 50.0 bits (114), Expect = 3e-07
Identities = 28/72 (38%), Positives = 40/72 (55%)
Frame = +1
Query: 511 IFPILQYSQDPKLFVYGCDFSSKAIEIMKQNELYNTDRCKVFVLGATEADWDVPFQENSI 690
++P+L+ P L +Y CDFS +AI+ +K++ YN +R FV TE I
Sbjct: 70 VYPLLEVQ--PNLKIYCCDFSPRAIDFVKKHSCYNENRVFPFVNDITEDSLLEVLGSACI 127
Query: 691 DIVVLIFVLSAI 726
D + IFVLSAI
Sbjct: 128 DTLTAIFVLSAI 139
Score = 44.8 bits (101), Expect(2) = 6e-07
Identities = 17/41 (41%), Positives = 27/41 (65%)
Frame = +2
Query: 242 SNIHNEHLKSLEEDADKHWDAFYDIHQNRFFKDRHWLFTEF 364
S + + ++ ++++ K WD FY ++ RFFKDRHWL EF
Sbjct: 5 SKLSDFWVEKYKKESKKSWDKFYKRNETRFFKDRHWLDREF 45
Score = 23.8 bits (49), Expect(2) = 6e-07
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +2
Query: 479 IFEIGCGVGN 508
I E+GCGVGN
Sbjct: 59 ILEVGCGVGN 68
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 27.5 bits (58), Expect = 2.1
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Frame = +2
Query: 263 LKSLEEDADKHWDAFYDIHQNRFFKDRHWLFTEFPELAPDNT-SAPVRVFSETANHGNKQ 439
L++LEEDA + D+ YD + F D H P L S P++ + T N +
Sbjct: 79 LRTLEEDAFSYTDSVYDFEERSF--DEH--EPPIPPLHKTGVFSVPLQP-THTVNSNSDD 133
Query: 440 NTTHSSTNDTIRNIFEIGCGVGNQ 511
+SS N+ + EI N+
Sbjct: 134 GYENSSKNEYLDFNSEISASPVNE 157
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 26.2 bits (55), Expect = 4.8
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -2
Query: 153 LQHFPDIYSQIEVFYQNYHPLI 88
+Q + DIY ++ + NY PLI
Sbjct: 434 VQEYEDIYESVKTQFSNYGPLI 455
>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1033
Score = 26.2 bits (55), Expect = 4.8
Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Frame = +2
Query: 278 EDADKHW-DAFYDIHQNRFFKDRHWLFTEFPELAPDNTSAPVRVFSETANHGNKQ--NTT 448
E D W AF RF + F EF + T+ V + N+G K N+T
Sbjct: 755 EGRDSEWLGAFAQNFYRRFLSLLGYQFREFAAI----TALSVL---DACNNGTKYVVNST 807
Query: 449 HSSTNDTIRNIFE 487
TN+ I N+FE
Sbjct: 808 SKLTNEEINNVFE 820
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 25.4 bits (53), Expect = 8.4
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = +2
Query: 2 KNSSSTYDTNILIP*IRYSIKPKAFKIKKIN 94
+ STYD +L+P Y P + +K ++
Sbjct: 255 QQDQSTYDQKVLMPPASYLSSPNQYTLKNVS 285
>SPBC27B12.13 |tom40|SPBC8D2.22|mitochondrial TOM complex subunit
Tom40|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -2
Query: 441 FCLFPWFAVSENTRTGADVL 382
FC PWF VS G+ VL
Sbjct: 62 FCTSPWFTVSHAFALGSQVL 81
>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 521
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = -2
Query: 681 LLERYIPVSLCCTQYKYLTSICIVKLILFHYFNS 580
+++++IP +L C+QY TS+ +L+ +F S
Sbjct: 422 IVDQHIPGALTCSQYP--TSVASTQLVQTSHFTS 453
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,315,848
Number of Sequences: 5004
Number of extensions: 74809
Number of successful extensions: 271
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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