Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0785.Seq
(733 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0302 - 2361948-2362649,2363422-2363617,2363873-2363997,236... 62 6e-10
07_03_0066 - 13011785-13011998,13012570-13012730,13013396-130134... 34 0.10
10_06_0151 + 11276554-11276916,11277020-11277403 29 5.0
07_03_1692 - 28733184-28733980,28734306-28734373,28734481-287345... 29 5.0
06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,805... 29 5.0
05_05_0121 + 22525782-22525998,22526526-22526609,22526797-225268... 29 5.0
05_02_0003 + 5520331-5520476,5520572-5520644,5520762-5520928,552... 29 5.0
07_03_0605 + 19908541-19909605,19909703-19910092 28 6.6
09_02_0107 + 4354470-4354589,4355058-4355156,4355292-4355596,435... 28 8.8
07_03_0604 + 19903654-19904598 28 8.8
07_01_1180 - 11188789-11188797,11189032-11189068,11190328-111903... 28 8.8
07_01_0893 + 7484598-7484744,7484837-7484902,7494387-7494530,749... 28 8.8
06_03_0497 + 21424732-21424899,21424992-21425057,21425176-214256... 28 8.8
02_01_0190 + 1276808-1278214,1278450-1278743,1278815-1279087,127... 28 8.8
>03_01_0302 -
2361948-2362649,2363422-2363617,2363873-2363997,
2364118-2364180,2364445-2364495,2364597-2364668,
2364779-2364886,2365031-2365135,2365505-2365555,
2365971-2365995,2366234-2366258,2366352-2366439
Length = 536
Score = 61.7 bits (143), Expect = 6e-10
Identities = 28/74 (37%), Positives = 46/74 (62%)
Frame = +1
Query: 511 IFPILQYSQDPKLFVYGCDFSSKAIEIMKQNELYNTDRCKVFVLGATEADWDVPFQENSI 690
IFP++ S P +FV+ CDFS +A++++K+++ Y DR F T Q +S+
Sbjct: 72 IFPLI--STYPDIFVHACDFSPRAVDLVKKHKDYRPDRVNAFACDITSEQLTENVQPSSV 129
Query: 691 DIVVLIFVLSAIDP 732
D+V +IF+LSA+ P
Sbjct: 130 DVVTMIFMLSAVAP 143
>07_03_0066 -
13011785-13011998,13012570-13012730,13013396-13013464,
13014228-13014449
Length = 221
Score = 34.3 bits (75), Expect = 0.10
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +2
Query: 296 WDAFYDIHQ-NRFFKDRHWLFTEFPELAPDNTSAPV 400
W +F+ H +FFK+R +L EFPEL SA V
Sbjct: 60 WTSFHRRHTCGKFFKERRYLLKEFPELLNSKDSAKV 95
>10_06_0151 + 11276554-11276916,11277020-11277403
Length = 248
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = +2
Query: 296 WDAFYDIHQNRFFKDRHWLFTEFPELAPDNTSAPVRV 406
WDAF + +N F D H LF E L P V
Sbjct: 179 WDAFTTLARNYFLVDDHPLFPEIRRLISQAEVTPAEV 215
>07_03_1692 -
28733184-28733980,28734306-28734373,28734481-28734594,
28734835-28734884,28735012-28735422,28735534-28735610,
28736083-28736257,28736843-28736939,28737070-28737833,
28737900-28738001,28738093-28738174,28739004-28739161
Length = 964
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +2
Query: 263 LKSLEEDADKHWDAFYDIHQNRFFKDRHWLFTEFPELAPDNTS 391
L+S++ AD H + YD H N D WL T+ PD S
Sbjct: 520 LQSIKGAADLHTSSIYDHHVNSADGDVSWLKTDKFGSRPDEGS 562
>06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,
8057595-8058314,8058404-8058603,8058988-8059172,
8059287-8059354,8059432-8060246,8060502-8060599,
8060702-8060887,8061358-8061538,8061651-8061812,
8061894-8061937,8062059-8062115,8062409-8062505,
8062614-8062786,8062868-8063081,8063270-8063395,
8064072-8064188,8064459-8064566,8064729-8064898,
8065049-8065127,8065211-8065285,8065845-8065942,
8066030-8066137,8066238-8066295,8066527-8066631,
8067461-8069516,8069804-8070697,8070896-8071852,
8072022-8072075,8072157-8072222,8072294-8073472,
8073868-8075598,8075764-8075829,8076763-8077788,
8077893-8078041
Length = 4264
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +2
Query: 413 ETANHGNKQNTTHSSTNDTIRNIFEIGCGVGNQFSQ 520
ET+N N THS TND + +GC ++
Sbjct: 3028 ETSNESRGDNPTHSCTNDDSHDKNLVGCSPSEDLNE 3063
>05_05_0121 +
22525782-22525998,22526526-22526609,22526797-22526820,
22527118-22527233,22527691-22527936,22528176-22528256,
22528666-22528782,22529139-22529492
Length = 412
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -2
Query: 630 LTSICIVKLILFHYFNSFR*EITAIYK-*FWILTVLQ 523
+ S+ VKL+L Y SF EI AIY W +TVL+
Sbjct: 274 MLSVTSVKLLLVVYCRSFTNEILAIYTIRTWSMTVLE 310
>05_02_0003 +
5520331-5520476,5520572-5520644,5520762-5520928,
5520929-5521223,5521531-5521674,5521756-5521890,
5522004-5522093,5523702-5523809,5523905-5523986,
5525362-5525417,5525888-5525986,5526090-5526394,
5526898-5527075,5527167-5527280,5527376-5527507,
5527614-5527718
Length = 742
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +3
Query: 84 KKSMDDNSDKRPQFGNRYLENAEEVFKHNSWDNVEWDEDQEKKAQE 221
KK +D ++K ++ N Y + V+ +W+ V +ED E A++
Sbjct: 603 KKIANDQNNKENEYRNFYFFHRISVYFLKNWEGVGKEEDYENCARQ 648
>07_03_0605 + 19908541-19909605,19909703-19910092
Length = 484
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = +2
Query: 296 WDAFYDIHQNRFFKDRHWLFTEFPELAPDNTSAPVRV 406
WDAF + N F D H LF E L + P V
Sbjct: 410 WDAFKTLAHNYFLVDDHPLFPEIRALLAGVEATPAEV 446
>09_02_0107 +
4354470-4354589,4355058-4355156,4355292-4355596,
4356101-4356278,4356368-4356481,4356543-4356674,
4356784-4356888
Length = 350
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = +3
Query: 84 KKSMDDNSDKRPQFGNRYLENAEEVFKHNSWDNVEWDEDQEKKAQE 221
KK +D ++K ++ N Y + V+ +W+ +ED E A++
Sbjct: 211 KKIANDQNNKENEYRNFYFFHRTSVYFLKNWEGTGKEEDYENCARQ 256
>07_03_0604 + 19903654-19904598
Length = 314
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +2
Query: 296 WDAFYDIHQNRFFKDRHWLFTEFPELAPDNTSAPVRV 406
W+AF + N F D H LF E +L + P V
Sbjct: 241 WEAFKTLAHNYFLVDDHPLFPEIRQLLAGVEATPAEV 277
>07_01_1180 -
11188789-11188797,11189032-11189068,11190328-11190392,
11190464-11190562,11190707-11190878,11190973-11191325,
11191451-11191561,11191637-11191708,11192203-11192420,
11192546-11192594,11192697-11192750,11192876-11192958,
11193088-11193304,11193387-11193510,11194042-11194105,
11194413-11194500,11194623-11194724,11194842-11194937
Length = 670
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/57 (26%), Positives = 32/57 (56%)
Frame = +3
Query: 81 LKKSMDDNSDKRPQFGNRYLENAEEVFKHNSWDNVEWDEDQEKKAQEKVRNNSQVTF 251
L ++ ++NS+ + Q LE++E +HN +N+ + Q K+ E +++ +V F
Sbjct: 378 LSQNQENNSENKDQLIMVTLEDSETQSQHNEKENLP-VQQQYTKSTENKKDSLEVVF 433
>07_01_0893 +
7484598-7484744,7484837-7484902,7494387-7494530,
7494860-7495235,7495904-7496017,7496282-7496454,
7496562-7496669,7497311-7497377,7497791-7497904,
7498121-7498257,7498727-7498813,7498962-7498986,
7499044-7499266,7499770-7499947,7500039-7500152,
7500249-7500380,7500488-7500588,7500720-7500933
Length = 839
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = +3
Query: 84 KKSMDDNSDKRPQFGNRYLENAEEVFKHNSWDNVEWDEDQEKKAQE 221
KK +D ++K ++ N Y + V+ +W+ +ED E A++
Sbjct: 630 KKIANDQNNKENEYMNFYFFHRSSVYFLKNWEGAGKEEDYENCARQ 675
>06_03_0497 +
21424732-21424899,21424992-21425057,21425176-21425634,
21425945-21426088,21426172-21426306,21426418-21426808,
21427256-21427428,21427508-21427615,21427715-21427810,
21427896-21428003,21428644-21428792,21428924-21428925,
21429071-21429207,21429538-21429842,21430922-21431099,
21431192-21431305,21431373-21431504,21431610-21431843
Length = 1032
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = +3
Query: 84 KKSMDDNSDKRPQFGNRYLENAEEVFKHNSWDNVEWDEDQEKKAQE 221
KK +D ++K ++ N Y + V+ +W+ +ED E A++
Sbjct: 850 KKIANDQNNKENEYRNFYFFHRTSVYFLKNWEGAGKEEDYENCARQ 895
>02_01_0190 +
1276808-1278214,1278450-1278743,1278815-1279087,
1279204-1279336,1279425-1279551,1279788-1280284,
1280578-1280642,1280722-1280823,1281020-1281162,
1281761-1281816,1282214-1282869,1282975-1283165,
1283280-1283574,1283738-1283778,1284082-1284104,
1284173-1284369,1284472-1284581,1285309-1285639,
1285968-1286060,1286095-1286166,1286626-1286886
Length = 1788
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +3
Query: 69 KHLKLKKSMDDNSDKRPQFGNRYLENAEEVFKHNSWDNVEWDE 197
+ L++ + + +KRP+ + LE AEE+ K + W+E
Sbjct: 344 ERLEISRKTEKIVEKRPKLSMKPLEQAEELEKRQASFGQHWEE 386
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,426,785
Number of Sequences: 37544
Number of extensions: 405726
Number of successful extensions: 1210
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1210
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -