Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0785.Seq
(733 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52279| Best HMM Match : No HMM Matches (HMM E-Value=.) 69 4e-12
SB_34915| Best HMM Match : No HMM Matches (HMM E-Value=.) 69 4e-12
SB_20385| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-05
SB_14697| Best HMM Match : Psf2 (HMM E-Value=8.7e-08) 29 3.9
SB_16072| Best HMM Match : Ion_trans (HMM E-Value=0.32) 29 3.9
SB_35072| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_55505| Best HMM Match : Trypsin (HMM E-Value=0) 28 9.0
SB_36049| Best HMM Match : WD40 (HMM E-Value=2e-07) 28 9.0
SB_11563| Best HMM Match : SNF7 (HMM E-Value=0.28) 28 9.0
>SB_52279| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 60
Score = 68.9 bits (161), Expect = 4e-12
Identities = 27/50 (54%), Positives = 38/50 (76%)
Frame = +3
Query: 96 DDNSDKRPQFGNRYLENAEEVFKHNSWDNVEWDEDQEKKAQEKVRNNSQV 245
D ++ RPQFGNR L + +VF+HN+WDNVEW E+QE++AQ K+ N+ V
Sbjct: 3 DKTANPRPQFGNRMLTDPSKVFEHNAWDNVEWGEEQEEEAQAKIAENAAV 52
>SB_34915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 98
Score = 68.9 bits (161), Expect = 4e-12
Identities = 27/50 (54%), Positives = 38/50 (76%)
Frame = +3
Query: 96 DDNSDKRPQFGNRYLENAEEVFKHNSWDNVEWDEDQEKKAQEKVRNNSQV 245
D ++ RPQFGNR L + +VF+HN+WDNVEW E+QE++AQ K+ N+ V
Sbjct: 3 DKTANPRPQFGNRMLTDPSKVFEHNAWDNVEWGEEQEEEAQAKIAENAAV 52
Score = 31.1 bits (67), Expect = 0.96
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +2
Query: 254 NEHLKS-LEEDADKHWDAFYDIHQNRF 331
+E LK E +A++ WD FY HQNR+
Sbjct: 55 DEQLKEKYENEANQFWDEFYTQHQNRY 81
>SB_20385| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 46.4 bits (105), Expect = 2e-05
Identities = 19/34 (55%), Positives = 22/34 (64%)
Frame = +2
Query: 272 LEEDADKHWDAFYDIHQNRFFKDRHWLFTEFPEL 373
LE+DA K+WD FY + FFKDR W EF EL
Sbjct: 392 LEQDARKNWDLFYKRNSTNFFKDRRWTTREFTEL 425
Score = 46.4 bits (105), Expect = 2e-05
Identities = 25/74 (33%), Positives = 39/74 (52%)
Frame = +1
Query: 511 IFPILQYSQDPKLFVYGCDFSSKAIEIMKQNELYNTDRCKVFVLGATEADWDVPFQENSI 690
I P+L+ + + + CDFS +A+ +K++ Y+ + F T+ D S+
Sbjct: 449 INPLLEEGYN--FYFHACDFSPRAVNFVKESPFYDEAKVNAFQCDLTKDDLLENIPACSV 506
Query: 691 DIVVLIFVLSAIDP 732
DI LIFVLSAI P
Sbjct: 507 DIATLIFVLSAIHP 520
>SB_14697| Best HMM Match : Psf2 (HMM E-Value=8.7e-08)
Length = 323
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/60 (25%), Positives = 26/60 (43%)
Frame = +3
Query: 6 IRRVHTILIF*FHKSATVLNLKHLKLKKSMDDNSDKRPQFGNRYLENAEEVFKHNSWDNV 185
I R+H +F + A ++ + + S DD PQ G Y + + K + +D V
Sbjct: 36 ITRIHKRSLFEADRRAFIITINSFGTELSKDDRQKLFPQCGKLYPDGLSRLSKADDYDQV 95
>SB_16072| Best HMM Match : Ion_trans (HMM E-Value=0.32)
Length = 293
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/63 (25%), Positives = 30/63 (47%)
Frame = +3
Query: 39 FHKSATVLNLKHLKLKKSMDDNSDKRPQFGNRYLENAEEVFKHNSWDNVEWDEDQEKKAQ 218
F + V ++ L +S++ + K RYL E + ++ DED+E+K +
Sbjct: 159 FDNALAVATIERAALMQSLETFASKNSIRQYRYLLRVECCPLECDYQKIDTDEDREQKQE 218
Query: 219 EKV 227
EK+
Sbjct: 219 EKL 221
>SB_35072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 331
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +2
Query: 386 TSAPVRVFSETANHGNKQNTTHSSTNDTIRNIFEIG 493
T+ P+ + NHG++ N +N TIR ++ +G
Sbjct: 154 TNIPLFIVIGYENHGDEFNCPEKWSNQTIRKLYTVG 189
>SB_55505| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 292
Score = 27.9 bits (59), Expect = 9.0
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +2
Query: 482 FEIGCGVGNQFSQYCNTVKIQNYLYMAVISH 574
+ +GCGV N+F Y N ++ +++ + H
Sbjct: 248 YGVGCGVANKFGVYSNMYELTDWVRDTISRH 278
>SB_36049| Best HMM Match : WD40 (HMM E-Value=2e-07)
Length = 711
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = -1
Query: 325 VLVYIIECIPVFISIFF*GL*MFIVNVTCELFLT 224
V+V II I V I+IFF + I+ +TC +F+T
Sbjct: 272 VVVIIITNITVIIAIFFIITNICIIIITCIIFIT 305
>SB_11563| Best HMM Match : SNF7 (HMM E-Value=0.28)
Length = 859
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = -3
Query: 719 DNTNINTTISMEFSWKGTSQSASVAPNTNTLHLSVL*SSFCFIISIA 579
D NI ++ + KG+S+S++ NTLHL+ L S I+ ++
Sbjct: 91 DLENIEQLVNQAANSKGSSRSSNFLELANTLHLAALASLKSEIVELS 137
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,563,184
Number of Sequences: 59808
Number of extensions: 517143
Number of successful extensions: 1490
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1490
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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