Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0785.Seq
         (733 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY051875-1|AAK93299.1|  325|Drosophila melanogaster LD36863p pro...   100   2e-21
AE014296-314|AAF47531.2|  325|Drosophila melanogaster CG13929-PB...   100   2e-21
AE014296-313|AAF47532.2|  302|Drosophila melanogaster CG13929-PA...   100   2e-21
AY060901-1|AAL28449.1|  236|Drosophila melanogaster GM05057p pro...    30   2.8  
AE014134-922|AAF52252.1|  236|Drosophila melanogaster CG7382-PA ...    30   2.8  
U89994-1|AAB50147.1|  497|Drosophila melanogaster gag protein pr...    30   3.7  

>AY051875-1|AAK93299.1|  325|Drosophila melanogaster LD36863p
           protein.
          Length = 325

 Score =  100 bits (239), Expect = 2e-21
 Identities = 43/74 (58%), Positives = 59/74 (79%)
 Frame = +1

Query: 511 IFPILQYSQDPKLFVYGCDFSSKAIEIMKQNELYNTDRCKVFVLGATEADWDVPFQENSI 690
           I P+LQYS +P+L V+GCDFS++AIEI++    ++  RC+VFV+ AT   W VPF+ENS 
Sbjct: 147 ILPLLQYSSEPQLKVFGCDFSARAIEILRSQRQFDEKRCEVFVMDATLDHWQVPFEENSQ 206

Query: 691 DIVVLIFVLSAIDP 732
           DI+V+IFVLSAI+P
Sbjct: 207 DIIVMIFVLSAIEP 220



 Score = 77.0 bits (181), Expect = 2e-14
 Identities = 43/90 (47%), Positives = 50/90 (55%)
 Frame = +2

Query: 239 TSNIHNEHLKSLEEDADKHWDAFYDIHQNRFFKDRHWLFTEFPELAPDNTSAPVRVFSET 418
           TS +  E  +  + DA K WD+FY IH NRFFKDRHWLFTEFPELAP   +A   V    
Sbjct: 77  TSKMEAEQKERFQTDAPKFWDSFYGIHDNRFFKDRHWLFTEFPELAP--LAADSAVLQP- 133

Query: 419 ANHGNKQNTTHSSTNDTIRNIFEIGCGVGN 508
                             R+IFE+GCGVGN
Sbjct: 134 ------------------RSIFELGCGVGN 145



 Score = 50.8 bits (116), Expect = 2e-06
 Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
 Frame = +3

Query: 66  LKHLKLKKSMDDNSDKRPQ-FGNRYLENAEEVFKHNSWDNVEWDEDQEKKAQEKVRNNS 239
           L+ L  K        K+P   G+R L +A EVF+ N+WD+V+WDE+QE  A+  V  NS
Sbjct: 18  LRRLASKSWEHTRQRKKPSGAGSRVLTDAREVFEFNAWDHVQWDEEQELAAKAAVAKNS 76


>AE014296-314|AAF47531.2|  325|Drosophila melanogaster CG13929-PB,
           isoform B protein.
          Length = 325

 Score =  100 bits (239), Expect = 2e-21
 Identities = 43/74 (58%), Positives = 59/74 (79%)
 Frame = +1

Query: 511 IFPILQYSQDPKLFVYGCDFSSKAIEIMKQNELYNTDRCKVFVLGATEADWDVPFQENSI 690
           I P+LQYS +P+L V+GCDFS++AIEI++    ++  RC+VFV+ AT   W VPF+ENS 
Sbjct: 147 ILPLLQYSSEPQLKVFGCDFSARAIEILRSQRQFDEKRCEVFVMDATLDHWQVPFEENSQ 206

Query: 691 DIVVLIFVLSAIDP 732
           DI+V+IFVLSAI+P
Sbjct: 207 DIIVMIFVLSAIEP 220



 Score = 77.0 bits (181), Expect = 2e-14
 Identities = 43/90 (47%), Positives = 50/90 (55%)
 Frame = +2

Query: 239 TSNIHNEHLKSLEEDADKHWDAFYDIHQNRFFKDRHWLFTEFPELAPDNTSAPVRVFSET 418
           TS +  E  +  + DA K WD+FY IH NRFFKDRHWLFTEFPELAP   +A   V    
Sbjct: 77  TSKMEAEQKERFQTDAPKFWDSFYGIHDNRFFKDRHWLFTEFPELAP--LAADSAVLQP- 133

Query: 419 ANHGNKQNTTHSSTNDTIRNIFEIGCGVGN 508
                             R+IFE+GCGVGN
Sbjct: 134 ------------------RSIFELGCGVGN 145



 Score = 50.8 bits (116), Expect = 2e-06
 Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
 Frame = +3

Query: 66  LKHLKLKKSMDDNSDKRPQ-FGNRYLENAEEVFKHNSWDNVEWDEDQEKKAQEKVRNNS 239
           L+ L  K        K+P   G+R L +A EVF+ N+WD+V+WDE+QE  A+  V  NS
Sbjct: 18  LRRLASKSWEHTRQRKKPSGAGSRVLTDAREVFEFNAWDHVQWDEEQELAAKAAVAKNS 76


>AE014296-313|AAF47532.2|  302|Drosophila melanogaster CG13929-PA,
           isoform A protein.
          Length = 302

 Score =  100 bits (239), Expect = 2e-21
 Identities = 43/74 (58%), Positives = 59/74 (79%)
 Frame = +1

Query: 511 IFPILQYSQDPKLFVYGCDFSSKAIEIMKQNELYNTDRCKVFVLGATEADWDVPFQENSI 690
           I P+LQYS +P+L V+GCDFS++AIEI++    ++  RC+VFV+ AT   W VPF+ENS 
Sbjct: 124 ILPLLQYSSEPQLKVFGCDFSARAIEILRSQRQFDEKRCEVFVMDATLDHWQVPFEENSQ 183

Query: 691 DIVVLIFVLSAIDP 732
           DI+V+IFVLSAI+P
Sbjct: 184 DIIVMIFVLSAIEP 197



 Score = 77.0 bits (181), Expect = 2e-14
 Identities = 43/90 (47%), Positives = 50/90 (55%)
 Frame = +2

Query: 239 TSNIHNEHLKSLEEDADKHWDAFYDIHQNRFFKDRHWLFTEFPELAPDNTSAPVRVFSET 418
           TS +  E  +  + DA K WD+FY IH NRFFKDRHWLFTEFPELAP   +A   V    
Sbjct: 54  TSKMEAEQKERFQTDAPKFWDSFYGIHDNRFFKDRHWLFTEFPELAP--LAADSAVLQP- 110

Query: 419 ANHGNKQNTTHSSTNDTIRNIFEIGCGVGN 508
                             R+IFE+GCGVGN
Sbjct: 111 ------------------RSIFELGCGVGN 122



 Score = 66.1 bits (154), Expect = 5e-11
 Identities = 26/45 (57%), Positives = 36/45 (80%)
 Frame = +3

Query: 105 SDKRPQFGNRYLENAEEVFKHNSWDNVEWDEDQEKKAQEKVRNNS 239
           ++KRPQFG R L +A++VFKHN+WD+V+WDE+QE  A+  V  NS
Sbjct: 9   NEKRPQFGTRLLTDADDVFKHNAWDHVQWDEEQELAAKAAVAKNS 53


>AY060901-1|AAL28449.1|  236|Drosophila melanogaster GM05057p
           protein.
          Length = 236

 Score = 30.3 bits (65), Expect = 2.8
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +2

Query: 323 NRFFKDRHWLFTEFPELAPDNTSAPVRVFSETANHGNKQNTTHSS 457
           N  + D      E P +  D   AP++ F ET+  G +Q+  HSS
Sbjct: 107 NNIYADALRRVVEDPRVQ-DAIGAPIKGFGETSRRGRRQHVAHSS 150


>AE014134-922|AAF52252.1|  236|Drosophila melanogaster CG7382-PA
           protein.
          Length = 236

 Score = 30.3 bits (65), Expect = 2.8
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +2

Query: 323 NRFFKDRHWLFTEFPELAPDNTSAPVRVFSETANHGNKQNTTHSS 457
           N  + D      E P +  D   AP++ F ET+  G +Q+  HSS
Sbjct: 107 NNIYADALRRVVEDPRVQ-DAIGAPIKGFGETSRRGRRQHVAHSS 150


>U89994-1|AAB50147.1|  497|Drosophila melanogaster gag protein
           protein.
          Length = 497

 Score = 29.9 bits (64), Expect = 3.7
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +1

Query: 592 MKQNELYNTDRCKVFVLGATEADWDVPFQENSIDIVVLIFVLSAID 729
           M  NE Y TD  +VFV GA ++  D+ F +   D+   + +   ++
Sbjct: 242 MSLNEKYRTDALRVFVTGAKKSLSDILFAKGPKDLPTALALAQEVE 287


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,864,006
Number of Sequences: 53049
Number of extensions: 747440
Number of successful extensions: 2473
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2473
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3293648160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)