Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0785.Seq
         (733 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132949-36|CAJ58501.1|  311|Caenorhabditis elegans Hypothetical...    52   4e-07
Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical pr...    45   5e-05
Z82264-7|CAB05164.3|  499|Caenorhabditis elegans Hypothetical pr...    33   0.16 
AL033514-24|CAA22108.1| 2121|Caenorhabditis elegans Hypothetical...    30   1.5  
AF047660-2|AAQ01522.1|  188|Caenorhabditis elegans Hypothetical ...    29   4.5  
Z75540-3|CAD01084.1|  581|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z69787-2|CAA93635.2|  474|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U53154-10|AAC25849.1|  142|Caenorhabditis elegans Hypothetical p...    28   5.9  
U23521-4|AAC46816.4|  389|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AC024863-2|AAP31420.1|  366|Caenorhabditis elegans Prion-like-(q...    28   5.9  
AC024863-1|AAF60877.1|  481|Caenorhabditis elegans Prion-like-(q...    28   5.9  

>AL132949-36|CAJ58501.1|  311|Caenorhabditis elegans Hypothetical
           protein Y53F4B.42 protein.
          Length = 311

 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 20/53 (37%), Positives = 37/53 (69%), Gaps = 3/53 (5%)
 Frame = +3

Query: 96  DDNSDKRPQ---FGNRYLENAEEVFKHNSWDNVEWDEDQEKKAQEKVRNNSQV 245
           ++N D++P+   FG R+L +  +VF+HN+WD+VEW  +Q+++AQ  V+    +
Sbjct: 11  EENPDEKPKCNPFGTRFLTDDTKVFEHNAWDDVEWSPEQQEEAQRIVQGQKSM 63



 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 23/43 (53%), Positives = 31/43 (72%)
 Frame = +2

Query: 263 LKSLEEDADKHWDAFYDIHQNRFFKDRHWLFTEFPELAPDNTS 391
           ++ L   AD+ WDAFY  ++NRFFKDR+WL  EFPEL  ++ S
Sbjct: 71  MRLLSTPADQ-WDAFYAHNENRFFKDRNWLLKEFPELNVEDES 112



 Score = 51.6 bits (118), Expect = 6e-07
 Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
 Frame = +1

Query: 514 FPILQYSQDP-KLFVYGCDFSSKAIEIMKQNELYNTDRCKVFVLGATE-ADWDVPFQENS 687
           FP+LQ +    +L ++ CD++  AI ++K  + Y+ ++   FV   T+ A  + P    S
Sbjct: 133 FPLLQVNNSSSRLMLHSCDYAPNAIRVLKSQDAYDPEKMNAFVWDITQPASQEAP-NVGS 191

Query: 688 IDIVVLIFVLSAIDP 732
           +D +V I+VLSAI P
Sbjct: 192 LDYIVCIYVLSAIHP 206


>Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical
           protein ZK1058.5 protein.
          Length = 269

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 18/37 (48%), Positives = 24/37 (64%)
 Frame = +2

Query: 272 LEEDADKHWDAFYDIHQNRFFKDRHWLFTEFPELAPD 382
           LE DA K+WD FY  ++N FFKDR+W   +   + PD
Sbjct: 38  LEIDARKNWDKFYHRNKNNFFKDRNWSAEDLKMMCPD 74



 Score = 37.5 bits (83), Expect = 0.010
 Identities = 23/74 (31%), Positives = 39/74 (52%)
 Frame = +1

Query: 511 IFPILQYSQDPKLFVYGCDFSSKAIEIMKQNELYNTDRCKVFVLGATEADWDVPFQENSI 690
           +FP++    + KLF +  DFS  A++++++            V+  +      PF+E  +
Sbjct: 94  LFPLVAEIPNLKLFAF--DFSDNAVKLLEERAKELELSVATSVVDLSIPSVSSPFEEQ-V 150

Query: 691 DIVVLIFVLSAIDP 732
           D+  LIFVLSAI P
Sbjct: 151 DLATLIFVLSAIHP 164


>Z82264-7|CAB05164.3|  499|Caenorhabditis elegans Hypothetical
           protein C49C3.13 protein.
          Length = 499

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 17/57 (29%), Positives = 35/57 (61%)
 Frame = -3

Query: 725 IADNTNINTTISMEFSWKGTSQSASVAPNTNTLHLSVL*SSFCFIISIALDEKSQPY 555
           +A +TNI++++S + +W GTS  ++ AP        V  SS+C +I++++  K + +
Sbjct: 420 LAFSTNIDSSVSNQ-AWIGTSSYSNWAPGKPDKAQGVAYSSYCNVIALSVVNKGKDF 475


>AL033514-24|CAA22108.1| 2121|Caenorhabditis elegans Hypothetical
           protein Y75B8A.24 protein.
          Length = 2121

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = -2

Query: 363 NSVKSQCRSLKNLFWCIS*NASQCLSASSSKDFKCS 256
           +++K+ CR+LK+     S +  QCL+  S+K F CS
Sbjct: 546 SAIKAICRALKSSIRMESDSVQQCLAGLSTKLFVCS 581


>AF047660-2|AAQ01522.1|  188|Caenorhabditis elegans Hypothetical
           protein T09A12.2b protein.
          Length = 188

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = -2

Query: 141 PDIYSQIEVFYQNYHPL 91
           PD+YS+IEV  QN HPL
Sbjct: 118 PDMYSKIEVNGQNTHPL 134


>Z75540-3|CAD01084.1|  581|Caenorhabditis elegans Hypothetical
           protein F37D6.2b protein.
          Length = 581

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +2

Query: 368 ELAPDNTSAPVRVFSETANHGN-KQNTTHSSTNDTIRNIFEIG 493
           ++ P     PV + + TANHGN  Q T H ST   + N  +IG
Sbjct: 13  DVIPLTPRPPVVLKTTTANHGNNSQATVHVSTGKNL-NFDQIG 54


>Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical protein
            T04F3.1 protein.
          Length = 3517

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +3

Query: 39   FHKSATVLNL-KHLKLKKSMDDNSDKRPQFGNRYLENAEEVFKHNSWDNVEWDEDQEK 209
            F K+   L + K + L K   DNSD +    +    + ++VF   S  + E DED EK
Sbjct: 2052 FKKTTENLEIQKEVVLTKEEGDNSDVKDHKASAVNIDLDDVFIQRSSKHPENDEDDEK 2109


>Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical protein
            T04F3.1 protein.
          Length = 3517

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +3

Query: 39   FHKSATVLNL-KHLKLKKSMDDNSDKRPQFGNRYLENAEEVFKHNSWDNVEWDEDQEK 209
            F K+   L + K + L K   DNSD +    +    + ++VF   S  + E DED EK
Sbjct: 2052 FKKTTENLEIQKEVVLTKEEGDNSDVKDHKASAVNIDLDDVFIQRSSKHPENDEDDEK 2109


>Z69787-2|CAA93635.2|  474|Caenorhabditis elegans Hypothetical
           protein C44C10.3 protein.
          Length = 474

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3

Query: 212 FFLLVFIPFHIIPRVVFKHFFSIFQISIPK 123
           F L VF+ + ++   V ++ F+IF I +PK
Sbjct: 8   FHLCVFVTWQLVNFAVGQYIFNIFSIHVPK 37


>U53154-10|AAC25849.1|  142|Caenorhabditis elegans Hypothetical
           protein C33G8.3 protein.
          Length = 142

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
 Frame = +3

Query: 78  KLKKSMDDNSDKRPQFGNRYLENAEEVFKHNSW------DNVEWDEDQEKKAQEKVRN 233
           KL+K +D+  +K  +  ++  EN E+  K N        ++ E +ED++KK ++K +N
Sbjct: 49  KLEKKLDEIMEKVEKIKDKIEENKEKREKKNKKKGNKKDEDEEEEEDKDKKKKDKKKN 106


>U23521-4|AAC46816.4|  389|Caenorhabditis elegans Hypothetical
           protein F41C3.11 protein.
          Length = 389

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/52 (23%), Positives = 24/52 (46%)
 Frame = -2

Query: 426 WFAVSENTRTGADVLSGANSGNSVKSQCRSLKNLFWCIS*NASQCLSASSSK 271
           WF + E  R    +L+   +  +   + R   N FW ++   +QC+ +  +K
Sbjct: 331 WFKMDERERKIPYILNNNFNSGTTNKETRQALNGFWFLATKTNQCVISKVTK 382


>AC024863-2|AAP31420.1|  366|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 89,
           isoform b protein.
          Length = 366

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = -3

Query: 731 GSIADNTNINTT--ISMEFSWKGTSQSASVAPNTNT 630
           G+ ++NTN N+   ++++F  +G S  +S  PN+ T
Sbjct: 108 GATSNNTNSNSNKGVTIQFQLRGYSNPSSALPNSQT 143


>AC024863-1|AAF60877.1|  481|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 89,
           isoform a protein.
          Length = 481

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = -3

Query: 731 GSIADNTNINTT--ISMEFSWKGTSQSASVAPNTNT 630
           G+ ++NTN N+   ++++F  +G S  +S  PN+ T
Sbjct: 108 GATSNNTNSNSNKGVTIQFQLRGYSNPSSALPNSQT 143


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,024,176
Number of Sequences: 27780
Number of extensions: 411907
Number of successful extensions: 1434
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1434
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)