Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0785.Seq
         (733 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    25   0.97 
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   2.2  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   3.0  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   3.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.9  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   5.2  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   6.8  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   9.0  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 24.6 bits (51), Expect = 0.97
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = -2

Query: 534 TVLQYWENW---FPTPQPISNMLRIVSLVE 454
           T L  W+NW   + T +PISN++    ++E
Sbjct: 260 TYLIKWKNWDLKYNTWEPISNLINCSDILE 289


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 410 SETANHGNKQNTTHSSTNDTIRN 478
           ++   +GN+QN   ++ ND  RN
Sbjct: 511 NDNKRNGNRQNDNQNNQNDNNRN 533



 Score = 21.8 bits (44), Expect = 6.8
 Identities = 14/46 (30%), Positives = 19/46 (41%)
 Frame = +3

Query: 99  DNSDKRPQFGNRYLENAEEVFKHNSWDNVEWDEDQEKKAQEKVRNN 236
           DN +   Q GNR  +N +   K N   N + D  Q    Q   + N
Sbjct: 448 DNQNANKQNGNRQNDNRQNDNKQNG--NRQNDNKQNGNRQNDNKQN 491


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -2

Query: 198 LHPIPHYPTSCV*TLLQHFPDIYSQIEVFYQNYHPLIFLILN 73
           LH  P    +C  + L  FP    +I+V  + + P++F   N
Sbjct: 391 LHMQPR-KKNCCRSWLSKFPTRSKRIDVISRIFFPIVFAFFN 431


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -2

Query: 198 LHPIPHYPTSCV*TLLQHFPDIYSQIEVFYQNYHPLIFLILN 73
           LH  P    +C  + L  FP    +I+V  + + P++F   N
Sbjct: 391 LHMQPR-KKNCCRSWLSKFPTRSKRIDVISRIFFPIVFAFFN 431


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 673 KVHPSQPLLHPIQIPYIYL 617
           K+  SQP+  P Q PY++L
Sbjct: 813 KLSSSQPMQPPQQNPYMFL 831


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 121 NLGIDIWKMLKKCL 162
           N+GI+ W+ L +CL
Sbjct: 64  NIGINKWRFLLQCL 77


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -1

Query: 499 TTTYFKYVTNCIISRTVSCVLFVSM 425
           TT   + VTNC +S   +  L V +
Sbjct: 64  TTRRLRSVTNCFVSSLAAADLLVGL 88


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 653 SVAPNTNTLHLSVL*SSFCFIISIALDEKSQPYTNN 546
           +++P TN L+ S L S   + +++    KSQ   NN
Sbjct: 258 ALSPVTNNLYYSPLTSHSLYYVNMEPFMKSQYEENN 293


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,635
Number of Sequences: 438
Number of extensions: 4942
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)