Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0784.Seq
         (522 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    27   1.7  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    27   2.2  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    26   3.9  
SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma...    25   5.2  
SPBC18H10.10c |cwc16||complexed with Cdc5 protein Cwf16|Schizosa...    25   5.2  

>SPCC1183.07 |||U3 snoRNP-associated protein
           Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1690

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 345 AVYRNANSTFCICLSKGLNIFNRNIDFRPFTSK 247
           AVY+   S  C+CLS  L+     + F+P   K
Sbjct: 803 AVYKPQQSVTCVCLSVELSQEKAFMSFKPLAQK 835


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +2

Query: 2   KHPPTQLNVSNFMKYYY*KSLKSLMDFTNINY 97
           K PP+   V N     Y  SLKSL D   +NY
Sbjct: 12  KSPPSDSVVKNSSPIDYEHSLKSLQDERTLNY 43


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -3

Query: 517 DGWRAHSPPGVKWLLEPIDIYN 452
           DG   H P  V WLL P DIY+
Sbjct: 234 DGGPLHDPNTVMWLLRP-DIYS 254


>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 396

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 4/33 (12%)
 Frame = -1

Query: 345 AVYRNANSTFCICLSK----GLNIFNRNIDFRP 259
           A Y NA+S+  I  ++    GLN+F R++ F+P
Sbjct: 74  AKYLNASSSDSIAFTRDTTEGLNLFQRSMHFQP 106


>SPBC18H10.10c |cwc16||complexed with Cdc5 protein
           Cwf16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = +2

Query: 323 ELAFLYTACSLWNITLSAQ--SLPL*RHTSPNNIELISRGGWR 445
           E+   YT   +W+ +L     S P+  HT P N E I   G R
Sbjct: 52  EIGSYYTT-KIWSFSLKCHLCSNPIDVHTDPKNTEYIVASGGR 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,261,670
Number of Sequences: 5004
Number of extensions: 44307
Number of successful extensions: 84
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)