Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0784.Seq
         (522 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0569 + 23343861-23344751,23344841-23344984,23345071-233453...    29   3.0  
03_02_0793 + 11240685-11240990                                         28   4.0  
06_03_0562 + 22188780-22188910,22189848-22190415                       27   6.9  

>01_05_0569 +
           23343861-23344751,23344841-23344984,23345071-23345309,
           23346096-23346185,23346617-23346644
          Length = 463

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 373 CTELAAVTSHITKQH*TYISRWVAHLRCRCLW 468
           C EL ++   +T+ +  Y+  W   LRC  LW
Sbjct: 207 CPELESLALVLTQDYPRYVHIWSGSLRCVVLW 238


>03_02_0793 + 11240685-11240990
          Length = 101

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +1

Query: 274 ISVKNIQSL*QTDAKCGISVSIYSVFSLEHHFECTELAAVTS 399
           + + N+     + A CG ++ IYS+ S E+H +  E+ A+ S
Sbjct: 49  VKMGNVSDRSSSTASCGNNLPIYSLDSFEYHID-EEVEAIVS 89


>06_03_0562 + 22188780-22188910,22189848-22190415
          Length = 232

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 8/102 (7%)
 Frame = +2

Query: 236 SIEHLLVKGRKSIFLLKIFNPFDKQMQNVE-LAFLYTACSLWNI--TLSAQSLPL*RHTS 406
           S++ +L  G+ S  LL+    F+  ++  + LA+L+  C  W I   +  +++ L  +  
Sbjct: 55  SLDKILFGGQGSQALLEWKQRFNIALEVAKGLAYLHHECLEWVIHCDVKPENILLDENLE 114

Query: 407 PNNIE-----LISRGGWRIYVVDVYGLQ*PLNTRWAVSSPPI 517
           P   +     L++RGG  + V  + G +  L + W VSS PI
Sbjct: 115 PKIADFGLAKLLNRGGSNLNVSRIQGTRGYLASEW-VSSLPI 155


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,169,431
Number of Sequences: 37544
Number of extensions: 258426
Number of successful extensions: 412
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)