Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0784.Seq
         (522 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79605-2|CAB01903.1|  342|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AF016440-4|AAB65902.1|  157|Caenorhabditis elegans Adaptin, smal...    27   6.2  
Z68215-15|CAN86580.1| 1544|Caenorhabditis elegans Hypothetical p...    27   8.1  
Z68215-5|CAA92456.1| 1586|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z68215-4|CAA92457.1| 1584|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>Z79605-2|CAB01903.1|  342|Caenorhabditis elegans Hypothetical
           protein ZK678.2 protein.
          Length = 342

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
 Frame = +1

Query: 250 ACERTKIYISVKNIQSL*QTDAKCGISVS--IYSVFSLEHHFECTELAAVTSHITKQ 414
           AC+  ++   VK   +L  TD    +  S  IY +    HH   T +   +SH   Q
Sbjct: 64  ACKSCRLLKCVKAGMTLNSTDQNFNMKTSDRIYDLIQNLHHLNLTRMTLASSHCVSQ 120


>AF016440-4|AAB65902.1|  157|Caenorhabditis elegans Adaptin, small
           chain (clathrinassociated complex) protein 1 protein.
          Length = 157

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 341 YIETLIPHFASVCQRD*IFLTEI*IFVLSQ 252
           Y+E L  +F SVC+ D IF  E   F+L +
Sbjct: 87  YVELLDKYFGSVCELDIIFNFEKAYFILDE 116


>Z68215-15|CAN86580.1| 1544|Caenorhabditis elegans Hypothetical
           protein C53B4.4e protein.
          Length = 1544

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 8   PPTQLNVSNFMKYYY*KSLKSLMDFTNINYICISKVL 118
           P  QLN+S F+KY   ++ K     + +N  CI K++
Sbjct: 290 PYEQLNLSEFLKYA--QTSKHFFILSPVNVYCIQKIV 324


>Z68215-5|CAA92456.1| 1586|Caenorhabditis elegans Hypothetical
           protein C53B4.4b protein.
          Length = 1586

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 8   PPTQLNVSNFMKYYY*KSLKSLMDFTNINYICISKVL 118
           P  QLN+S F+KY   ++ K     + +N  CI K++
Sbjct: 290 PYEQLNLSEFLKYA--QTSKHFFILSPVNVYCIQKIV 324


>Z68215-4|CAA92457.1| 1584|Caenorhabditis elegans Hypothetical
           protein C53B4.4a protein.
          Length = 1584

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 8   PPTQLNVSNFMKYYY*KSLKSLMDFTNINYICISKVL 118
           P  QLN+S F+KY   ++ K     + +N  CI K++
Sbjct: 290 PYEQLNLSEFLKYA--QTSKHFFILSPVNVYCIQKIV 324


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,520,796
Number of Sequences: 27780
Number of extensions: 250905
Number of successful extensions: 388
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)