Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0783.Seq
         (674 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0526 + 10219803-10221107                                         29   2.6  
12_01_0156 + 1188143-1189957                                           29   4.5  
11_01_0158 + 1307648-1309462                                           29   4.5  
02_05_0101 - 25824093-25824112,25824734-25824842,25824927-258264...    29   4.5  
02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216     28   7.8  
01_06_1663 + 38980710-38981052,38981826-38982967                       28   7.8  

>09_02_0526 + 10219803-10221107
          Length = 434

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -1

Query: 413 WSMTAPTCPMTALTALSRSAGVTSSASVSMGSLP 312
           WS  +P+C +++L  +  +A VTSS   S+  +P
Sbjct: 69  WSRPSPSCRVSSLAFVPAAAAVTSSKRFSLDFVP 102


>12_01_0156 + 1188143-1189957
          Length = 604

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +2

Query: 41  ILSKDESSVGKDSDDDDIEGVRQRREQLSELKEA 142
           +  +DE S   DSD D  EG R++R +LS+  EA
Sbjct: 167 VAEEDEDSDASDSDSDG-EGGRRKRRRLSDDAEA 199


>11_01_0158 + 1307648-1309462
          Length = 604

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +2

Query: 41  ILSKDESSVGKDSDDDDIEGVRQRREQLSELKEA 142
           +  +DE S   DSD D  EG R++R +LS+  EA
Sbjct: 167 VAEEDEDSDASDSDSDG-EGGRRKRRRLSDDAEA 199


>02_05_0101 -
           25824093-25824112,25824734-25824842,25824927-25826429,
           25826596-25827333,25827712-25827919,25828455-25830409,
           25830868-25830960,25831044-25831100,25831189-25831272,
           25831345-25831437,25831622-25832053,25833593-25833933,
           25834663-25835215
          Length = 2061

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +2

Query: 50  KDESSVGKDSDDDDIEGVRQRREQLSELKEAAYEL 154
           KDE   G  SD  +I  V +R EQL EL+    E+
Sbjct: 482 KDEKGEGSRSDGLEISSVMKRWEQLKELRFEVVEV 516


>02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216
          Length = 1030

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -1

Query: 368 LSRSAGVTSSASVSMGSLPFSTTSRSTT*LMDISMDSWW 252
           +S ++ V SS +V +G LP   +SRS++ +  +    WW
Sbjct: 712 ISHASSVPSSRTV-LGPLPNVGSSRSSSAISTVERQQWW 749


>01_06_1663 + 38980710-38981052,38981826-38982967
          Length = 494

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +2

Query: 41  ILSKDESSVGKDSDDDD-IEGVRQRREQLSELKEAAYE 151
           ++  D +S+  DSDD+D I G  +RR++  + K   Y+
Sbjct: 410 LVQNDGNSIALDSDDEDLIRGSHKRRKRDRKRKRRRYD 447


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,788,541
Number of Sequences: 37544
Number of extensions: 237953
Number of successful extensions: 1246
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1238
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)