Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0783.Seq
         (674 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)                  31   0.85 
SB_51885| Best HMM Match : CHCH (HMM E-Value=3.9e-09)                  30   1.5  
SB_58405| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_54885| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_44730| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     29   4.5  
SB_54138| Best HMM Match : rve (HMM E-Value=6.8e-24)                   28   7.9  
SB_56497| Best HMM Match : Extensin_2 (HMM E-Value=0.16)               28   7.9  

>SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)
          Length = 3342

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 14/53 (26%), Positives = 29/53 (54%)
 Frame = +1

Query: 340  DDVTPADRDKAVSAVIGHVGAVIDHTLTNINQVLHRRDALKIMEILIKQLKDL 498
            + V P+         IG+  ++ D ++TN+++ +  +DA+K   I+ K +K L
Sbjct: 3284 EQVPPSKNRTTKKGSIGNNASIADKSMTNVDKAVMSKDAIKSPSIVKKLIKRL 3336


>SB_51885| Best HMM Match : CHCH (HMM E-Value=3.9e-09)
          Length = 159

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +2

Query: 32  VKVILSKDESSVGKDSDDDDIEGVRQRREQL 124
           +++  SK     GKD + DD++GV + R++L
Sbjct: 98  MQICFSKYPEVYGKDEEKDDVDGVEEERKEL 128


>SB_58405| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 757

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +1

Query: 361 RDKAVSAVIGHVGAVIDHTLTNINQVLHRRDALKIMEILIKQLKDLKKPE 510
           R K+ +A  G  GA      +NINQ+ HR+D        ++Q +  +KPE
Sbjct: 13  RTKSQNAAKGRKGASPPSPCSNINQIPHRKDK-------VRQSQSCRKPE 55


>SB_54885| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2988

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
 Frame = -1

Query: 410 SMTAPTCPMTALTALSRSAGVTSSASVSMGSLP---FSTTSRSTT*LMDISMDS 258
           ++ APT   T+ T  S +A +  S+S+   SLP   FS+T  S + L+  + +S
Sbjct: 655 TLPAPTPTFTSSTIFSTTASINFSSSLRQTSLPTLVFSSTGSSHSALLSSNSNS 708


>SB_44730| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1346

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +2

Query: 47  SKDESSVGKDSDDDDIEGVRQRREQLSELKEAAYELLGKAWPKDYET 187
           +KD S V K+ ++D  EG +   ++    K+     LGKA  K  ET
Sbjct: 363 NKDTSPVEKNDNEDSCEGEKPFAKKSKGKKKTVISKLGKAKNKPTET 409


>SB_54138| Best HMM Match : rve (HMM E-Value=6.8e-24)
          Length = 2160

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +3

Query: 432  PGAPPTGRP*NYGNTYQTIKRSQKTR-ELNRLRKIYQNYSKNLSKDSSHEIR 584
            P  P    P NYG TYQ  +  Q+ + +  R R++ Q   + L +    +++
Sbjct: 1477 PRGPTQSVPTNYGTTYQQQQYLQQQQYQQQRQRELQQQQQQQLQQQQQQQLQ 1528


>SB_56497| Best HMM Match : Extensin_2 (HMM E-Value=0.16)
          Length = 814

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +3

Query: 432 PGAPPTGRP*NYGNTYQTIKRSQKTR-ELNRLRKIYQNYSKNLSKDSSHEIR 584
           P  P    P NYG TYQ  +  Q+ + +  R R++ Q   + L +    +++
Sbjct: 131 PRGPTQSVPTNYGTTYQQQQYLQQQQYQQQRQRELQQQQQQQLQQQQQQQLQ 182


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,925,842
Number of Sequences: 59808
Number of extensions: 283853
Number of successful extensions: 1521
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1513
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)