Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0783.Seq
         (674 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83103-9|CAI79157.1|  376|Caenorhabditis elegans Hypothetical pr...    29   3.0  
U67949-6|AAB07559.2|  214|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z81502-3|CAB04104.1|  366|Caenorhabditis elegans Hypothetical pr...    29   4.0  
U80837-2|AAB37902.1|  315|Caenorhabditis elegans Hypothetical pr...    29   4.0  
Z47356-6|CAA87419.1|  554|Caenorhabditis elegans Hypothetical pr...    28   7.0  
AC084158-11|AAK68558.1|  555|Caenorhabditis elegans Hypothetical...    28   7.0  
AC006618-3|AAK68251.3|  960|Caenorhabditis elegans Patched relat...    28   7.0  

>Z83103-9|CAI79157.1|  376|Caenorhabditis elegans Hypothetical
           protein D1025.10 protein.
          Length = 376

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/58 (22%), Positives = 29/58 (50%)
 Frame = +2

Query: 5   DRFSQVYEIVKVILSKDESSVGKDSDDDDIEGVRQRREQLSELKEAAYELLGKAWPKD 178
           +  + V E +   + ++E    ++  ++ +E V +  E++ E+KE   E+     PKD
Sbjct: 122 ESMADVMEEINQEVEEEEEGEAEEGQEEVVEEVEEDEEEVEEIKEKVEEVREVTPPKD 179


>U67949-6|AAB07559.2|  214|Caenorhabditis elegans Hypothetical
           protein F55A4.1 protein.
          Length = 214

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +1

Query: 370 AVSAVIGHVGAVIDHTLTNINQVLHRRDALKIMEILIKQLKDLKK 504
           A++ V   +  V    +TNI  V+HR +AL I+E    +L  + K
Sbjct: 133 AMNTVSNELQDVTRIMVTNIEDVIHRGEALNILENRASELSGMSK 177


>Z81502-3|CAB04104.1|  366|Caenorhabditis elegans Hypothetical
           protein F14B6.3 protein.
          Length = 366

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
 Frame = +2

Query: 50  KDESSVGKDSDDDDIEGVRQRREQLSEL---KEAAYELLGKAWP-KDYETQEKYQNE 208
           ++E S  +D DD+D EG      +LSE     EA   L  K  P KD    +K+++E
Sbjct: 237 EEEDSSDEDLDDEDQEGESSIEPRLSETFKKSEARESLSSKEAPVKDLVIYQKFRDE 293


>U80837-2|AAB37902.1|  315|Caenorhabditis elegans Hypothetical
           protein F07E5.2 protein.
          Length = 315

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = +1

Query: 181 RDTGEISKRILRALFVNVPRVLAHHQLSILMSINYVVERLVVLNGNEP 324
           R  G IS  +   L +NV R   HH +      N  V R+  + G EP
Sbjct: 50  RFDGRISTTLPITLHLNVDRNSRHHYVEYAFQFNQSVLRIQDIRGQEP 97


>Z47356-6|CAA87419.1|  554|Caenorhabditis elegans Hypothetical
           protein T15H9.6 protein.
          Length = 554

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 10/41 (24%), Positives = 23/41 (56%)
 Frame = +1

Query: 397 GAVIDHTLTNINQVLHRRDALKIMEILIKQLKDLKKPENSI 519
           G   +  +  + Q+L +   +++ +I  ++ KD+K P+ SI
Sbjct: 389 GGFFESRIRQLVQILEKNQVIQVAQINPRKFKDVKDPKKSI 429


>AC084158-11|AAK68558.1|  555|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.14 protein.
          Length = 555

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -1

Query: 404 TAPTCPMTALTALSRSAGVTSSASVSMGSLPFSTTSRSTT 285
           T+PTCP  A    S +   ++S + +  + P + TSR T+
Sbjct: 232 TSPTCPKNATAVASVTTTASTSTTKTSPTKPPTPTSRPTS 271


>AC006618-3|AAK68251.3|  960|Caenorhabditis elegans Patched related
           family protein 4 protein.
          Length = 960

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 74  DSDDDDIEGVRQRREQLSELKE 139
           D DD+D+E  R++REQ    KE
Sbjct: 519 DDDDEDVETQREQREQSEAAKE 540


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,941,116
Number of Sequences: 27780
Number of extensions: 209592
Number of successful extensions: 1077
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)