Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0783.Seq
         (674 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    31   0.013
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             27   0.16 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    24   1.2  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   2.0  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   2.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.0  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   3.5  
AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           23   3.5  
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           23   3.5  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 30.7 bits (66), Expect = 0.013
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +3

Query: 489 KRSQKTRELNRLRKIYQNYSKNLSKDSSHEIRTNADS 599
           KR+ +  +LNR+ K Y NY    +KD + EI T   S
Sbjct: 442 KRTIENEQLNRMYKSYPNYIDKETKDMNLEISTRPKS 478


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +3

Query: 414 HSHKHQPGAPPT 449
           HSH H+PGAP T
Sbjct: 645 HSHPHEPGAPAT 656


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 44  LSKDESSVGKDSDDDDIE 97
           + +D+   G D DDDD+E
Sbjct: 389 VDEDDDDDGDDDDDDDVE 406


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/34 (26%), Positives = 15/34 (44%)
 Frame = +3

Query: 462 NYGNTYQTIKRSQKTRELNRLRKIYQNYSKNLSK 563
           NY N       +      N  +K+Y+NY  N+ +
Sbjct: 93  NYNNYNNNYNNNYNNNYNNNYKKLYKNYIINIEQ 126


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/34 (26%), Positives = 15/34 (44%)
 Frame = +3

Query: 462 NYGNTYQTIKRSQKTRELNRLRKIYQNYSKNLSK 563
           NY N       +      N  +K+Y+NY  N+ +
Sbjct: 93  NYNNYNNNYNNNYNNNYNNNYKKLYKNYIINIEQ 126


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -3

Query: 339  GVGVHGLVAVQHDEPLHHVVDGHQYG 262
            G G H + + ++D+P +   +  QYG
Sbjct: 1796 GSGTHNVFSPEYDDPANCAPEEDQYG 1821


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 531 IYQNYSKNLSKDSSHEIRTNADSI 602
           IYQN   +  + SSH +  N+D +
Sbjct: 213 IYQNADDSFHRLSSHTLNHNSDKM 236


>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 107 QRREQLSELKEAAYELLGKAWPKDY 181
           Q +E+   LKE   E+L +A  K Y
Sbjct: 122 QTKEEFQNLKEVMLEVLRQALGKQY 146


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 107 QRREQLSELKEAAYELLGKAWPKDY 181
           Q +E+   LKE   E+L +A  K Y
Sbjct: 122 QTKEEFQNLKEVMLEVLRQALGKQY 146


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,265
Number of Sequences: 438
Number of extensions: 2540
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)