Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0783.Seq
(674 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g62400.1 68418.m07831 hypothetical protein 29 2.1
At5g54250.2 68418.m06758 cyclic nucleotide-regulated ion channel... 29 2.1
At5g54250.1 68418.m06757 cyclic nucleotide-regulated ion channel... 29 2.1
At2g21400.1 68415.m02547 lateral root primordium (LRP) protein-r... 29 2.1
At1g16340.1 68414.m01955 2-dehydro-3-deoxyphosphooctonate aldola... 29 2.1
At4g21190.1 68417.m03064 pentatricopeptide (PPR) repeat-containi... 29 2.8
At3g49990.1 68416.m05466 expressed protein 29 3.8
At1g79500.3 68414.m09267 2-dehydro-3-deoxyphosphooctonate aldola... 29 3.8
At1g79500.2 68414.m09266 2-dehydro-3-deoxyphosphooctonate aldola... 29 3.8
At1g79500.1 68414.m09265 2-dehydro-3-deoxyphosphooctonate aldola... 29 3.8
At2g21420.1 68415.m02549 zinc finger protein-related contains lo... 28 5.0
At5g36850.1 68418.m04415 hypothetical protein similar to At1g277... 28 6.6
At3g44690.1 68416.m04806 expressed protein 28 6.6
At1g27780.1 68414.m03399 Ulp1 protease family protein similar to... 28 6.6
At5g40010.1 68418.m04852 AAA-type ATPase family protein contains... 27 8.7
At4g25730.1 68417.m03703 FtsJ-like methyltransferase family prot... 27 8.7
At4g02350.1 68417.m00319 exocyst complex subunit Sec15-like fami... 27 8.7
>At5g62400.1 68418.m07831 hypothetical protein
Length = 214
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/61 (27%), Positives = 32/61 (52%)
Frame = +2
Query: 11 FSQVYEIVKVILSKDESSVGKDSDDDDIEGVRQRREQLSELKEAAYELLGKAWPKDYETQ 190
F + + +L + SSV D D++++ +R ++L+EL+EA E G D ++
Sbjct: 39 FGTRFVFTQTLLCAEISSVKDDEDEEEMLKLRFMAKRLTELEEAFKEKTGPINQLDLQSL 98
Query: 191 E 193
E
Sbjct: 99 E 99
>At5g54250.2 68418.m06758 cyclic nucleotide-regulated ion channel /
cyclic nucleotide-gated channel (CNGC4) identical to
cyclic nucleotide and calmodulin-regulated ion channel
(cngc4) GI:4581203 from [Arabidopsis thaliana]
Length = 694
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +2
Query: 47 SKDESSVGKDSDDDDIEGVRQRREQLSELKEAAYE 151
S+D SSVG S++D+ E + E++ E++E E
Sbjct: 14 SRDSSSVGYYSEEDNTEEEDEEEEEMEEIEEEEEE 48
>At5g54250.1 68418.m06757 cyclic nucleotide-regulated ion channel /
cyclic nucleotide-gated channel (CNGC4) identical to
cyclic nucleotide and calmodulin-regulated ion channel
(cngc4) GI:4581203 from [Arabidopsis thaliana]
Length = 694
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +2
Query: 47 SKDESSVGKDSDDDDIEGVRQRREQLSELKEAAYE 151
S+D SSVG S++D+ E + E++ E++E E
Sbjct: 14 SRDSSSVGYYSEEDNTEEEDEEEEEMEEIEEEEEE 48
>At2g21400.1 68415.m02547 lateral root primordium (LRP)
protein-related similar to lateral root primordium 1
(LRP1) [Arabidopsis thaliana] GI:882341; contains Pfam
profile PF05142: Domain of unknown function (DUF702)
Length = 174
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = -3
Query: 375 DGLVAVSWRDVIGVGVHGLVAVQHDEPLHHVVDGHQYGQ 259
DG +++ + +G H + HD+ LH V+ H Y +
Sbjct: 97 DGKEQYAYQTTVNIGGHVFRGILHDQGLHKVMVDHHYNK 135
>At1g16340.1 68414.m01955 2-dehydro-3-deoxyphosphooctonate aldolase,
putative / phospho-2-dehydro-3-deoxyoctonate aldolase,
putative / 3-deoxy-D-manno-octulosonic acid 8-phosphate
synthetase, putative similar to Swiss-Prot:Q9AV97
2-dehydro-3-deoxyphosphooctonate aldolase (EC 4.1.2.16)
(Phospho-2- dehydro-3-deoxyoctonate aldolase)
(3-deoxy-D-manno-octulosonic acid 8-phosphate
synthetase) (KDO-8-phosphate synthetase) (KDO 8-P
synthase) [Arabidopsis thaliana]
Length = 291
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -3
Query: 381 GTDGLVAVSWRDVIGVGVHGLVAVQHDEPLHHVVDG 274
G L+ R + VGV G+ HD+PL+ VDG
Sbjct: 218 GLRELIPCIARTAVAVGVDGIFMEVHDDPLNAPVDG 253
>At4g21190.1 68417.m03064 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 307
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +2
Query: 44 LSKDESSVGKDSD--DDDIEGVRQRREQLSELKEAAYELLG 160
LS+ E + D D D++IE + E LSE +E ELLG
Sbjct: 248 LSEGEGGLSSDEDKIDNEIESEEEDGEDLSEEEEDEKELLG 288
>At3g49990.1 68416.m05466 expressed protein
Length = 502
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +2
Query: 68 GKDSDDDDI--EGVRQRREQLSELKEAAYELLGKAWPKDYETQEKYQN 205
G DSD D E + E+ +E + GKA KDYE +EKY N
Sbjct: 263 GSDSDGDGYIAEDGEEEEEEDFMAQEVQNLIHGKA--KDYELEEKYMN 308
>At1g79500.3 68414.m09267 2-dehydro-3-deoxyphosphooctonate aldolase
/ phospho-2-dehydro-3-deoxyoctonate aldolase /
3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase
(KDSA) identical to Swiss-Prot:Q9AV97
2-dehydro-3-deoxyphosphooctonate aldolase (EC 4.1.2.16)
(Phospho-2- dehydro-3-deoxyoctonate aldolase)
(3-deoxy-D-manno-octulosonic acid 8-phosphate
synthetase) (KDO-8-phosphate synthetase) (KDO 8-P
synthase) [Arabidopsis thaliana]
Length = 290
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -3
Query: 381 GTDGLVAVSWRDVIGVGVHGLVAVQHDEPLHHVVDG 274
G L+ R + VGV G+ HD+PL VDG
Sbjct: 217 GLRELIPCIARTAVAVGVDGIFMEVHDDPLSAPVDG 252
>At1g79500.2 68414.m09266 2-dehydro-3-deoxyphosphooctonate aldolase
/ phospho-2-dehydro-3-deoxyoctonate aldolase /
3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase
(KDSA) identical to Swiss-Prot:Q9AV97
2-dehydro-3-deoxyphosphooctonate aldolase (EC 4.1.2.16)
(Phospho-2- dehydro-3-deoxyoctonate aldolase)
(3-deoxy-D-manno-octulosonic acid 8-phosphate
synthetase) (KDO-8-phosphate synthetase) (KDO 8-P
synthase) [Arabidopsis thaliana]
Length = 290
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -3
Query: 381 GTDGLVAVSWRDVIGVGVHGLVAVQHDEPLHHVVDG 274
G L+ R + VGV G+ HD+PL VDG
Sbjct: 217 GLRELIPCIARTAVAVGVDGIFMEVHDDPLSAPVDG 252
>At1g79500.1 68414.m09265 2-dehydro-3-deoxyphosphooctonate aldolase
/ phospho-2-dehydro-3-deoxyoctonate aldolase /
3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase
(KDSA) identical to Swiss-Prot:Q9AV97
2-dehydro-3-deoxyphosphooctonate aldolase (EC 4.1.2.16)
(Phospho-2- dehydro-3-deoxyoctonate aldolase)
(3-deoxy-D-manno-octulosonic acid 8-phosphate
synthetase) (KDO-8-phosphate synthetase) (KDO 8-P
synthase) [Arabidopsis thaliana]
Length = 290
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -3
Query: 381 GTDGLVAVSWRDVIGVGVHGLVAVQHDEPLHHVVDG 274
G L+ R + VGV G+ HD+PL VDG
Sbjct: 217 GLRELIPCIARTAVAVGVDGIFMEVHDDPLSAPVDG 252
>At2g21420.1 68415.m02549 zinc finger protein-related contains low
similarity to zinc finger proteins and Pfam PF01485: IBR
domain
Length = 468
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = +2
Query: 53 DESSVGKDSDDDDIEGVRQRREQLSELKEAAYELLGKAWPKDYETQEKYQN 205
DE DSDDDD++G + SEL +E PKD Q+ N
Sbjct: 420 DEDDGYIDSDDDDVDG--DDNDDGSELDGINFEDFAVHLPKDVNEQKDESN 468
>At5g36850.1 68418.m04415 hypothetical protein similar to At1g27780,
At2g05560, At4g05280, At3g24385, At3g42590, At2g12110,
At2g12100
Length = 231
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -2
Query: 166 GLAEQLVGRLFELRQLFASLPHALYVVVVRIFTHRRFVLG 47
G A++ R F LR A+ P A+Y +R+ TH R + G
Sbjct: 71 GSADEGRHRTFFLRCFAANNPTAVYYEGIRVLTHERNING 110
>At3g44690.1 68416.m04806 expressed protein
Length = 1176
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 80 DDDDIEGVRQRREQLSELKEAAYELLGKAWPKDYET 187
D +D G+R R L++ KEA ++ + KD+ET
Sbjct: 759 DHEDARGLRYRGVSLNDRKEAYFQSESQQLLKDHET 794
>At1g27780.1 68414.m03399 Ulp1 protease family protein similar to
At3g24380, At5g36840, At5g35010, At3g42740, At4g05290,
At2g14770, At3g43390, At2g05560, At4g08880, At1g34730,
At1g27790, At1g34740, At5g36850, At3g42730, At1g52020,
At3g24390, At4g05280, At1g25886, At4g03300; contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 1468
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -2
Query: 166 GLAEQLVGRLFELRQLFASLPHALYVVVVRIFTHRRFVLG 47
G A++ R F LR A+ P A+Y +R+ TH R + G
Sbjct: 1308 GSADEGRHRTFFLRCFTANNPTAVYYEGIRVLTHERNING 1347
>At5g40010.1 68418.m04852 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 514
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +2
Query: 14 SQVYEIVKVILSKDESSVGKDSDDDDIEGVRQRREQLSELKEAAYELLG-KAW 169
S VY+ ++ LSKD SS K + I+G + + + +E E G K W
Sbjct: 67 SDVYDAIQSYLSKDSSSRAKKLTANTIKGNKSIILSMDDHEEITDEFQGVKVW 119
>At4g25730.1 68417.m03703 FtsJ-like methyltransferase family protein
contains Pfam profile: PF01728 FtsJ-like
methyltransferase
Length = 821
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +2
Query: 59 SSVGKDSDDDDIEGVRQRREQLSELKEAAYE 151
S KDSD D E ++ EQ+ E+ E AYE
Sbjct: 440 SDDSKDSDRDSDEERQKYTEQMEEIFEQAYE 470
>At4g02350.1 68417.m00319 exocyst complex subunit Sec15-like family
protein contains Pfam profile PF04091: Exocyst complex
subunit Sec15-like
Length = 771
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/46 (30%), Positives = 29/46 (63%)
Frame = +2
Query: 449 GTPLKLWKYLSNN*KISKNPRTQ*AKENISELLEKSIEGFITRNQN 586
G PL++ + + ++K+ T A++ +S +L+K I+GF+T +N
Sbjct: 545 GVPLRMAERGRRHFPLTKSQNT--AEDTLSGMLKKKIDGFMTLLEN 588
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,162,473
Number of Sequences: 28952
Number of extensions: 192853
Number of successful extensions: 928
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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