Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0782.Seq
         (790 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ...    59   6e-10
SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces ...    46   8e-06
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    33   0.047
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom...    32   0.081
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    30   0.43 
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo...    29   0.76 
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    28   1.3  
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc...    26   5.4  
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    26   5.4  
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch...    26   5.4  
SPAC16E8.17c |||succinate-CoA ligase alpha subunit|Schizosacchar...    26   7.1  
SPBC1718.05 |trs31||TRAPP complex subunit Trs31 |Schizosaccharom...    25   9.4  
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    25   9.4  

>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 377

 Score = 59.3 bits (137), Expect = 6e-10
 Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
 Frame = +3

Query: 87  CKFLHDKKHVAICRKFLKGICHE-DTCLLSHDITSEKMPTCYFYLKGMCTKENCPYL 254
           C+F+H+     IC KFL G C++ + C LSH++   ++P C ++L G C   NC Y+
Sbjct: 224 CRFVHEPTRKTICPKFLNGRCNKAEDCNLSHELDPRRIPACRYFLLGKCNNPNCRYV 280



 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
 Frame = +3

Query: 36  CPLFKKFGKCIRQIKGNCKFLHDKKHVAICRKFLKGICHEDTCLLSHDITSEKMPTCYFY 215
           CP F   G+C +    N     D + +  CR FL G C+   C   H   SE  P C+ +
Sbjct: 236 CPKFLN-GRCNKAEDCNLSHELDPRRIPACRYFLLGKCNNPNCRYVHIHYSENAPICFEF 294

Query: 216 LK-GMC 230
            K G C
Sbjct: 295 AKYGFC 300



 Score = 33.1 bits (72), Expect = 0.047
 Identities = 11/31 (35%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
 Frame = +2

Query: 254 NVKLNKNSKLCSDFLK-GYCERGTKCEYRHV 343
           ++  ++N+ +C +F K G+CE GT C+ +H+
Sbjct: 281 HIHYSENAPICFEFAKYGFCELGTSCKNQHI 311


>SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 170

 Score = 45.6 bits (103), Expect = 8e-06
 Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
 Frame = +3

Query: 54  FGKCIRQIKGNCKFLHDKKHVAICRKFLKGICHE-DTCLLSHDITSEKMPTCYFYL-KGM 227
           FG+      GN +    K    +C+ +L+G+C + + C   H+   +KMP C+FY  +G 
Sbjct: 31  FGRSALLNSGNGRDSGSKMGSVVCKHWLRGLCKKGEQCDFLHEYNLKKMPPCHFYAERGW 90

Query: 228 CTK-ENCPYL 254
           C+  E C YL
Sbjct: 91  CSNGEECLYL 100



 Score = 28.7 bits (61), Expect = 1.0
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +2

Query: 275 SKLCSDFLKGYCERGTKCEYRH 340
           S +C  +L+G C++G +C++ H
Sbjct: 51  SVVCKHWLRGLCKKGEQCDFLH 72



 Score = 26.2 bits (55), Expect = 5.4
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
 Frame = +3

Query: 87  CKFLHDK--KHVAICRKFL-KGICHE-DTCLLSHDITSEKMPTCYFYLKGMC 230
           C FLH+   K +  C  +  +G C   + CL  H   S+++  C +Y  G C
Sbjct: 68  CDFLHEYNLKKMPPCHFYAERGWCSNGEECLYLHLDPSKQVGVCAWYNMGFC 119


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 33.1 bits (72), Expect = 0.047
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 108 KHVAICRKFLKGICHE-DTCLLSHDITSEKMPTCYFYLKGMC 230
           +HV  C+ F  G C   + C  SH + +E+ P C ++LKG C
Sbjct: 43  QHVP-CKFFRNGTCTAGENCPFSHSLETER-PICKYFLKGNC 82



 Score = 29.5 bits (63), Expect = 0.57
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +2

Query: 251 FNVKLNKNSKLCSDFLKGYCERGTKCEYRH 340
           F+  L     +C  FLKG C+ G KC   H
Sbjct: 63  FSHSLETERPICKYFLKGNCKFGPKCALSH 92


>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
           Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 32.3 bits (70), Expect = 0.081
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 266 NKNSKLCSDFLKGYCERGTKCEYRH 340
           N  S  C  F +G C  G+KCEY H
Sbjct: 111 NPGSFFCLYFARGMCSEGSKCEYLH 135


>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +2

Query: 284 CSDFLKGYCERGTKCEYRHVNITNETKKRLMRTK 385
           CSD+L   C      EY+HVN   E     +R K
Sbjct: 706 CSDYLSDLCRTAVLKEYKHVNEDTEDVDDTVRVK 739


>SPAC3A11.02 |cps3|mug188|zinc finger protein
           Cps3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 29.1 bits (62), Expect = 0.76
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 254 NVKLNKNSKLCSDFLKGYCERGTKCEYRHV 343
           +++L     +C  F KG C+ G+KC   HV
Sbjct: 60  DLELATEKTICKYFQKGNCKFGSKCALEHV 89


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 17/57 (29%), Positives = 32/57 (56%)
 Frame = +2

Query: 323  KCEYRHVNITNETKKRLMRTKQITLLKVKNQHTEKPNKNESVEESQNERNMDCRYYR 493
            +C ++   IT  T KR+ R  Q+ ++    Q+  KP K ++V+ +++E   D  YY+
Sbjct: 899  RCFFKTEFIT--TLKRINRNIQV-IVGPTIQYCRKPGKVQTVKTAKDETTKDYDYYK 952


>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 438

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +2

Query: 383 KQITLLKVKNQHTEKPNKNESVEESQNERNMDCRYYRDIKPNSKIPKQ 526
           K+ T+L  K+   E+ N    VEE+      D +  ++IKP SK  K+
Sbjct: 45  KETTVLTKKDVEVEEAN---GVEEAAETIESDTKEVQNIKPKSKKKKK 89


>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +2

Query: 254 NVKLNKNSKLCSDF-LKGYCERGTKCEYRHV 343
           N  ++    +C D+ L GYC  G  C++ H+
Sbjct: 180 NTIIDYQPDVCKDYKLTGYCGYGDTCKFLHM 210


>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 775

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +2

Query: 236 RKLSLFNVKLNKNSKLCSDFL 298
           RK+ ++N + +KN +LCS+ L
Sbjct: 684 RKMEVYNNQFSKNKELCSNLL 704


>SPAC16E8.17c |||succinate-CoA ligase alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 331

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +1

Query: 532 GVIKPIRCKLGNLPSFI 582
           G+I+P +CK+G +PS I
Sbjct: 159 GIIRPGQCKIGIMPSHI 175


>SPBC1718.05 |trs31||TRAPP complex subunit Trs31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 209

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -2

Query: 363 FVSLVIFTCLYS-HFVPLSQYPLR 295
           F+    F C  S H VPLSQYP R
Sbjct: 167 FLDSAQFPCKASAHSVPLSQYPYR 190


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 126 DKWPHVFYHAKIYNFLLFVVCISQI 52
           +KWP +F H+ +  FLL +  IS +
Sbjct: 776 EKWPSLFSHSFLSMFLLLLDSISPL 800


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,319,500
Number of Sequences: 5004
Number of extensions: 71706
Number of successful extensions: 254
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)