Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0782.Seq
         (790 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49233| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.15 
SB_4335| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.20 
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.26 
SB_28644| Best HMM Match : zf-CCCH (HMM E-Value=1.5e-05)               33   0.35 
SB_8190| Best HMM Match : DUF477 (HMM E-Value=0.13)                    32   0.46 
SB_21044| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 32   0.46 
SB_3125| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.9  
SB_51103| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_3931| Best HMM Match : GA (HMM E-Value=3.9)                         29   3.2  
SB_50276| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_50530| Best HMM Match : Pencillinase_R (HMM E-Value=3.3)            29   4.3  
SB_33889| Best HMM Match : zf-CCHC (HMM E-Value=2.1e-05)               29   4.3  
SB_23461| Best HMM Match : DUF504 (HMM E-Value=0.0038)                 28   9.9  
SB_34263| Best HMM Match : MORN (HMM E-Value=0.067)                    28   9.9  
SB_13091| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  

>SB_49233| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 309

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 275 SKLCSDFLKGYCERGTKCEYRH 340
           + +C D+ +G C RG KC++RH
Sbjct: 35  NNICRDYQRGVCNRGGKCKFRH 56



 Score = 33.1 bits (72), Expect = 0.26
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 260 KLNKNSKLCSDFLKGYCERGTKCEYRH 340
           +  ++  +C DFL   C RG  C++RH
Sbjct: 134 RAGRSDPICKDFLNNKCSRGNLCKFRH 160



 Score = 32.3 bits (70), Expect = 0.46
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +2

Query: 257 VKLNKNSKLCSDFLKGYCERGTKCEYRHVNITNETKKRLMRT 382
           ++L     +C D+  G C R T C+Y H  I+N+ +K  +RT
Sbjct: 62  IELQSPPMICRDYQNGKCNRST-CKYMH--ISNDDEKVYLRT 100



 Score = 28.3 bits (60), Expect = 7.5
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
 Frame = +3

Query: 120 ICRKFLKGICHED-TCLLSHD----ITSEKMPT-CYFYLKGMCTKENCPYL 254
           ICR + +G+C+    C   H     I  +  P  C  Y  G C +  C Y+
Sbjct: 37  ICRDYQRGVCNRGGKCKFRHPEGMGIELQSPPMICRDYQNGKCNRSTCKYM 87


>SB_4335| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 948

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 11/25 (44%), Positives = 20/25 (80%)
 Frame = -2

Query: 150 DKYLLKICDKWPHVFYHAKIYNFLL 76
           DKYL ++ DK+PH+ ++ K+ +F+L
Sbjct: 251 DKYLSELVDKFPHLLWNGKVLHFIL 275


>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 550

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +2

Query: 281 LCSDFLKGYCERGTKCEYRH 340
           +CS ++KG C+RG +C YRH
Sbjct: 236 ICSFWVKGECKRGEECPYRH 255


>SB_28644| Best HMM Match : zf-CCCH (HMM E-Value=1.5e-05)
          Length = 267

 Score = 32.7 bits (71), Expect = 0.35
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 266 NKNSKLCSDFLKGYCERGTKCEYRH 340
           + NS  C  FLKG C  G  C+Y H
Sbjct: 135 SSNSNACRHFLKGNCWHGDNCKYSH 159



 Score = 32.3 bits (70), Expect = 0.46
 Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +3

Query: 123 CRKFLKGIC-HEDTCLLSHDITS 188
           CR FLKG C H D C  SHD+++
Sbjct: 141 CRHFLKGNCWHGDNCKYSHDVSN 163


>SB_8190| Best HMM Match : DUF477 (HMM E-Value=0.13)
          Length = 295

 Score = 32.3 bits (70), Expect = 0.46
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -3

Query: 455 FLQHFHSYLVFPYVDFLLLTMLFVLSSSIVFLF-HW*YLHVY 333
           FLQHF  +L+  Y+ F+    + V+ S I+F F HW    +Y
Sbjct: 207 FLQHFSYWLIQDYLCFVASIFIAVILSLILFAFVHWTCSKIY 248


>SB_21044| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 1507

 Score = 32.3 bits (70), Expect = 0.46
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 120 ICRKFLKGICHEDTCLLSHDITSEKMPTCYFYLKGMCT 233
           IC   L+ +CH DT  +  D+ S+    C F + G C+
Sbjct: 527 ICTNQLRRLCHHDTRRVPQDVGSDGHAGCGFCIAGSCS 564


>SB_3125| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1268

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 18/63 (28%), Positives = 24/63 (38%)
 Frame = +2

Query: 284 CSDFLKGYCERGTKCEYRHVNITNETKKRLMRTKQITLLKVKNQHTEKPNKNESVEESQN 463
           C  FL G C R   C +RH    N+       TK  +  K   +    PNK      ++ 
Sbjct: 350 CPFFLHGLCHR-PYCHFRHAKPGNKNSSNAHGTKSSSSNKQTKKKKYTPNKQPPGIHTRT 408

Query: 464 ERN 472
           E N
Sbjct: 409 ESN 411


>SB_51103| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 216

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 78  KGNCKFLHDKKHVAICRKFLK-GICHEDTCLLSHDITS 188
           K    F  DKK    CR+FL  G C  D C  +H++TS
Sbjct: 46  KSEVLFFPDKK--IACRQFLSDGGCSRDRCSYAHEVTS 81


>SB_3931| Best HMM Match : GA (HMM E-Value=3.9)
          Length = 288

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +2

Query: 329 EYRHVNITNETKKRLMRTKQ-ITLLKVKNQHTEKPNKNESVEESQNER 469
           E  +  +T      L+R K   T+ K  N H E+ N N +V ++ N R
Sbjct: 140 EKNNSTVTKAFNNHLVREKNNSTVTKASNNHLERENNNSTVTKAFNNR 187


>SB_50276| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1048

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +3

Query: 63  CIRQIKGNCKFLHDKKHVAICRKFLKGICHEDTCLLSHD 179
           C+   +G CK  +      IC+ FL+G C    C  SHD
Sbjct: 93  CVSYEQGFCKSGNSCTRWHICKGFLEGSCTGTHCDKSHD 131



 Score = 29.1 bits (62), Expect = 4.3
 Identities = 10/39 (25%), Positives = 17/39 (43%)
 Frame = +3

Query: 63   CIRQIKGNCKFLHDKKHVAICRKFLKGICHEDTCLLSHD 179
            C+   K  CK       + +C+KF++  C    C   H+
Sbjct: 931  CLDHNKKQCKAGKKCNRIHVCKKFIQRKCRRKNCFFMHE 969


>SB_50530| Best HMM Match : Pencillinase_R (HMM E-Value=3.3)
          Length = 356

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -3

Query: 473 YFFHFDFLQHFHSYLVFPY 417
           Y++H+D+  H+H Y  + Y
Sbjct: 298 YYYHYDYYYHYHYYYYYDY 316


>SB_33889| Best HMM Match : zf-CCHC (HMM E-Value=2.1e-05)
          Length = 525

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 15/43 (34%), Positives = 18/43 (41%)
 Frame = +3

Query: 117 AICRKFLKGICHEDTCLLSHDITSEKMPTCYFYLKGMCTKENC 245
           A C   LKG  +  TC   H        TCY +LKG   +  C
Sbjct: 66  ATCNDHLKGCSNRATCN-DHLKRCSNRATCYDHLKGCSNRATC 107


>SB_23461| Best HMM Match : DUF504 (HMM E-Value=0.0038)
          Length = 657

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = +2

Query: 284 CSDFLKGYCERGTKCEYRHVNITNETKKRLMRTKQITLLKVKNQHTEKPNKNES 445
           C  FL G C  G +C  +H  IT  T+        + +   K++   K  K+ES
Sbjct: 37  CKFFLLGQCRYGEQCFNKH--ITGSTQPSTTTAVVVEIKPEKHKEEAKDVKHES 88


>SB_34263| Best HMM Match : MORN (HMM E-Value=0.067)
          Length = 757

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +3

Query: 624 LRGGQIL*SAGQMNFQMSPGPEDYTAYAFLPHMLFLMLISTKSHK 758
           ++GG++      +N Q++  P DY     LPH+   + + +KS K
Sbjct: 79  VKGGKVDLQKYVINKQLTKAPHDYPDKKSLPHVHVALWLMSKSRK 123


>SB_13091| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 78

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +3

Query: 669 QMSPGPEDYTAYAFLPHMLFLMLISTKSHKRVKKIYVRN 785
           ++  GP +YT +  LP   FL+++    H  ++KI+ +N
Sbjct: 22  EIGAGPGNYTKFLQLPERSFLIVVD--YHPHMEKIFPKN 58


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,436,684
Number of Sequences: 59808
Number of extensions: 489392
Number of successful extensions: 1487
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1483
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)