Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0782.Seq
(790 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g21570.1 68414.m02697 zinc finger (CCCH-type) family protein ... 89 3e-18
At5g56930.1 68418.m07107 zinc finger (CCCH-type) family protein ... 46 4e-05
At1g30460.1 68414.m03723 zinc finger (CCCH-type) family protein ... 42 6e-04
At2g41900.1 68415.m05183 zinc finger (CCCH-type) family protein ... 33 0.16
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ... 33 0.16
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 33 0.16
At2g20280.1 68415.m02369 zinc finger (CCCH-type) family protein ... 33 0.22
At5g12850.1 68418.m01475 zinc finger (CCCH-type) family protein ... 32 0.38
At5g58620.1 68418.m07346 zinc finger (CCCH-type) family protein ... 32 0.50
At5g40450.1 68418.m04905 expressed protein 32 0.50
At4g29190.1 68417.m04176 zinc finger (CCCH-type) family protein ... 32 0.50
At2g25900.1 68415.m03108 zinc finger (CCCH-type) family protein ... 32 0.50
At2g19810.1 68415.m02316 zinc finger (CCCH-type) family protein ... 32 0.50
At2g05160.1 68415.m00543 zinc finger (CCCH-type) family protein ... 32 0.50
At5g42050.1 68418.m05119 expressed protein similar to gda-1 [Pis... 31 0.66
At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein ... 31 0.66
At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein ... 31 0.87
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 31 0.87
At3g08505.2 68416.m00987 zinc finger (CCCH-type/C3HC4-type RING ... 31 0.87
At3g08505.1 68416.m00986 zinc finger (CCCH-type/C3HC4-type RING ... 31 0.87
At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1 pro... 31 1.2
At3g55980.1 68416.m06220 zinc finger (CCCH-type) family protein ... 31 1.2
At2g40140.1 68415.m04937 zinc finger (CCCH-type) family protein ... 31 1.2
At2g47680.1 68415.m05955 zinc finger (CCCH type) helicase family... 30 1.5
At5g60040.1 68418.m07529 DNA-directed RNA polymerase, putative s... 30 2.0
At5g59930.1 68418.m07515 DC1 domain-containing protein / UV-B li... 30 2.0
At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2 pro... 30 2.0
At2g17010.1 68415.m01961 mechanosensitive ion channel domain-con... 29 2.7
At5g56900.2 68418.m07101 CwfJ-like family protein / zinc finger ... 29 3.5
At5g56900.1 68418.m07100 CwfJ-like family protein / zinc finger ... 29 3.5
At3g12130.1 68416.m01509 KH domain-containing protein / zinc fin... 29 3.5
At5g64070.1 68418.m08046 phosphatidylinositol 4-kinase (PI4K) ne... 29 4.6
At5g06770.1 68418.m00765 KH domain-containing protein / zinc fin... 29 4.6
At2g19640.2 68415.m02295 SET domain-containing protein contains ... 28 6.1
At5g38150.1 68418.m04598 expressed protein 28 8.1
At3g52980.1 68416.m05840 RNA recognition motif (RRM)-containing ... 28 8.1
At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein ... 28 8.1
At2g33835.1 68415.m04152 zinc finger (CCCH-type) family protein ... 28 8.1
>At1g21570.1 68414.m02697 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 470
Score = 89.0 bits (211), Expect = 3e-18
Identities = 34/80 (42%), Positives = 48/80 (60%)
Frame = +3
Query: 12 KLRKNNIPCPLFKKFGKCIRQIKGNCKFLHDKKHVAICRKFLKGICHEDTCLLSHDITSE 191
+L K C F +FGKC + G C ++HD +A+C KFL G+C C L+H + E
Sbjct: 238 RLAKKKKYCQFFTRFGKCNKD-DGKCPYVHDPSKIAVCTKFLNGLCANANCKLTHKVIPE 296
Query: 192 KMPTCYFYLKGMCTKENCPY 251
+MP C +YL+G+C E CPY
Sbjct: 297 RMPDCSYYLQGLCNNEACPY 316
Score = 39.1 bits (87), Expect = 0.003
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 10/85 (11%)
Frame = +3
Query: 12 KLRKNNIPCPLF---KKFGKCIRQIKG-----NCKFLHD--KKHVAICRKFLKGICHEDT 161
K K++ CP K C + + G NCK H + + C +L+G+C+ +
Sbjct: 254 KCNKDDGKCPYVHDPSKIAVCTKFLNGLCANANCKLTHKVIPERMPDCSYYLQGLCNNEA 313
Query: 162 CLLSHDITSEKMPTCYFYLKGMCTK 236
C H + P C +LKG C++
Sbjct: 314 CPYRHVHVNPIAPICDGFLKGYCSE 338
Score = 35.1 bits (77), Expect = 0.054
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 254 NVKLNKNSKLCSDFLKGYCERGTKCEYRH 340
+V +N + +C FLKGYC G +C +H
Sbjct: 318 HVHVNPIAPICDGFLKGYCSEGDECRKKH 346
>At5g56930.1 68418.m07107 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 675
Score = 45.6 bits (103), Expect = 4e-05
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = +3
Query: 108 KHVAICRKFLKGICHE-DTCLLSHDITSEK--MPTCYFYLKGMCTKENCPY 251
K + CR +LKG CHE D C SHD E P CYF + ++CP+
Sbjct: 351 KPIKYCRHYLKGRCHEGDKCKFSHDTIPETKCSPCCYFATQSCMKGDDCPF 401
Score = 32.7 bits (71), Expect = 0.29
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +2
Query: 269 KNSKLCSDFLKGYCERGTKCEYRHVNITNETK 364
K K C +LKG C G KC++ H I ETK
Sbjct: 351 KPIKYCRHYLKGRCHEGDKCKFSHDTIP-ETK 381
>At1g30460.1 68414.m03723 zinc finger (CCCH-type) family protein /
YT521-B-like family protein low similarity to cleavage
and polyadenylation specificity factor 30 kDa subunit
[Bos taurus] GI:2327052; contains Pfam profiles PF00642:
Zinc finger C-x8-C-x5-C-x3-H type (and similar),
PF04146: YT521-B-like family; supporting cDNA
gi|24415581|gb|AY140901.1|
Length = 678
Score = 41.5 bits (93), Expect = 6e-04
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +3
Query: 120 ICRKFLKGICHE-DTCLLSHDITSEKMPTC-YFYLKGMCTKENCPY 251
+CR +L+G+C + D C H +MP C +F L G C +++C Y
Sbjct: 65 VCRHWLRGLCMKGDACGFLHQFDKARMPICRFFRLYGECREQDCVY 110
Score = 30.7 bits (66), Expect = 1.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 266 NKNSKLCSDFLKGYCERGTKCEYRHVNI 349
N++ K C+ + G+C G C YRH +
Sbjct: 114 NEDIKECNMYKLGFCPNGPDCRYRHAKL 141
>At2g41900.1 68415.m05183 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
PF00023: Ankyrin repeat
Length = 716
Score = 33.5 bits (73), Expect = 0.16
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = +2
Query: 284 CSDFLKGYCERGTKCEYRH 340
C DF KG C RG CEY H
Sbjct: 307 CPDFRKGACRRGDMCEYAH 325
>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}; contains Pfam profile:
PF00076 RNA recognition motif (aka RRM, RBD, or RNP
domain)
Length = 483
Score = 33.5 bits (73), Expect = 0.16
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +2
Query: 281 LCSDFLKGYCERGTKCEYRH 340
+CS F++G C RG +C YRH
Sbjct: 162 ICSFFIRGECTRGDECPYRH 181
>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}, RNA Binding Protein 47
[Nicotiana plumbaginifolia] GI:9663769; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 481
Score = 33.5 bits (73), Expect = 0.16
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +2
Query: 281 LCSDFLKGYCERGTKCEYRH 340
+CS F++G C RG +C YRH
Sbjct: 162 VCSFFIRGECTRGAECPYRH 181
>At2g20280.1 68415.m02369 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 371
Score = 33.1 bits (72), Expect = 0.22
Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Frame = +2
Query: 257 VKLNKNSKLCSDFLKGYCERGTKCEYRH-VNITNETKK----RLMRTKQITLLKVKNQHT 421
V ++ S LC F G C++G KC++ H +NI + +K R + + + +
Sbjct: 85 VGVDPKSILCEFFKAGQCQKGFKCKFSHDLNIQRKGEKIDIYSDTRDEDGDMDEWDQETL 144
Query: 422 EKPNKNESVEESQNE-RNMDCRYYRD 496
EK +++ E +QN+ ++ C+Y+ D
Sbjct: 145 EKVVESKKNEYNQNKPTDIVCKYFLD 170
>At5g12850.1 68418.m01475 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
PF00023: Ankyrin repeat
Length = 706
Score = 32.3 bits (70), Expect = 0.38
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 284 CSDFLKGYCERGTKCEYRH 340
C DF KG C++G CEY H
Sbjct: 303 CPDFKKGSCKQGDMCEYAH 321
>At5g58620.1 68418.m07346 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
PF00023: Ankyrin repeat
Length = 607
Score = 31.9 bits (69), Expect = 0.50
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +2
Query: 284 CSDFLKGYCERGTKCEYRH 340
C +F KG C RG CEY H
Sbjct: 255 CPEFRKGSCSRGDTCEYAH 273
>At5g40450.1 68418.m04905 expressed protein
Length = 2910
Score = 31.9 bits (69), Expect = 0.50
Identities = 22/72 (30%), Positives = 34/72 (47%)
Frame = +2
Query: 302 GYCERGTKCEYRHVNITNETKKRLMRTKQITLLKVKNQHTEKPNKNESVEESQNERNMDC 481
G G + E NITNET++ L+ K ++LL VK+ + K ES E E +
Sbjct: 822 GLDSNGAEAEQIDQNITNETEEILV-AKPVSLLDVKSVEQMQKPKLESPSEVSEETSKTV 880
Query: 482 RYYRDIKPNSKI 517
+ KP ++
Sbjct: 881 DEKIEEKPEEEV 892
>At4g29190.1 68417.m04176 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 356
Score = 31.9 bits (69), Expect = 0.50
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 260 KLNKNSKLCSDFLKGYCERGTKCEYRH 340
K + + C DF KG C++G CE+ H
Sbjct: 117 KYHYSGTACPDFRKGGCKKGDSCEFAH 143
>At2g25900.1 68415.m03108 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 315
Score = 31.9 bits (69), Expect = 0.50
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 260 KLNKNSKLCSDFLKGYCERGTKCEYRH 340
K + + C +F KG C RG CE+ H
Sbjct: 128 KFHYSGTACPEFRKGSCRRGDSCEFSH 154
>At2g19810.1 68415.m02316 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 359
Score = 31.9 bits (69), Expect = 0.50
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 260 KLNKNSKLCSDFLKGYCERGTKCEYRH 340
K + + C +F KG C+RG CE+ H
Sbjct: 116 KFHYSGTACPEFRKGCCKRGDACEFSH 142
>At2g05160.1 68415.m00543 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 536
Score = 31.9 bits (69), Expect = 0.50
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 278 KLCSDFLKGYCERGTKCEYRHVNITNE 358
K+C F KG+C+ G C Y H I E
Sbjct: 160 KICHYFNKGFCKHGNNCRYFHGQIIPE 186
>At5g42050.1 68418.m05119 expressed protein similar to gda-1 [Pisum
sativum] GI:2765418
Length = 349
Score = 31.5 bits (68), Expect = 0.66
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Frame = +2
Query: 239 KLSLFNVKLN---KNSKLCSDFLKGYCERGTKCEYRHVNITNETK-KRLMRTKQITLLKV 406
K + NV +N +S + DF KG K Y +VN+ N K K + QI
Sbjct: 117 KFNSVNVNVNGYSPSSAVNGDFNKGVYTSMKKYGY-NVNLKNNNKNKGIDEDHQIQKGGK 175
Query: 407 KNQHTEKPNKNESVEESQNERNMDCRYYRDIKPNSKIPK 523
KN+ ++ N N+ E+ +N +D R ++ + P +P+
Sbjct: 176 KNRKNQQNNNNQRNEDDKN-NGLDKR-FKTLPPAEALPR 212
>At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 363
Score = 31.5 bits (68), Expect = 0.66
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 278 KLCSDFLKGYCERGTKCEYRH 340
K+CS + G C+RG +C +RH
Sbjct: 158 KICSFYTIGQCKRGAECSFRH 178
>At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 1230
Score = 31.1 bits (67), Expect = 0.87
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 269 KNSKLCSDFLKGYCERGTKCEYRH 340
K K+C + GYC+RG C + H
Sbjct: 1206 KGLKICKFYESGYCKRGASCSFWH 1229
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 31.1 bits (67), Expect = 0.87
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = +3
Query: 36 CPLFKKFGKCIRQIKGNCKFLHDKKHVAICRKFLKGICHED--TCLLSHDITSEKMPTCY 209
C F++ G+C R +CKF HD+K A G HE+ + HD E C
Sbjct: 136 CRAFQR-GECTRG--DSCKFSHDEKRAA-----NTGWGHEEDRSSKWDHDKNREGRGVCR 187
Query: 210 FYLKGMCTK-ENCPY 251
+ +G CT+ ++C +
Sbjct: 188 AFQRGECTRGDSCKF 202
>At3g08505.2 68416.m00987 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein contains zinc finger
C-x8-C-x5-C-x3-H type (and similar) domains,
Pfam:PF00642 and zinc finger, C3HC4 type (RING finger)
domain, Pfam:PF00097
Length = 323
Score = 31.1 bits (67), Expect = 0.87
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +2
Query: 281 LCSDFLKGYCERGTKCEYRHVNITNETKKRLMRTKQITLLKVKNQHTEKPNKN-ESVEES 457
+CS G C RG +C + H ++ N K+ + + + + EK K+ E++++S
Sbjct: 106 ICSFAAAGDCPRGNQCPHMHGDLCNTCGKKCLHPFRPEEREEHTKECEKKQKHIEALKQS 165
Query: 458 QN 463
Q+
Sbjct: 166 QD 167
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +3
Query: 120 ICRKFLKGICHE-DTCLLSHDITSEKMPTCYFYLKGMC 230
+C+ F+ G C + + C SHD C FY K +C
Sbjct: 6 LCKFFVHGSCLKGENCEFSHDSKDPPNNVCTFYQKRIC 43
>At3g08505.1 68416.m00986 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein contains zinc finger
C-x8-C-x5-C-x3-H type (and similar) domains,
Pfam:PF00642 and zinc finger, C3HC4 type (RING finger)
domain, Pfam:PF00097
Length = 323
Score = 31.1 bits (67), Expect = 0.87
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +2
Query: 281 LCSDFLKGYCERGTKCEYRHVNITNETKKRLMRTKQITLLKVKNQHTEKPNKN-ESVEES 457
+CS G C RG +C + H ++ N K+ + + + + EK K+ E++++S
Sbjct: 106 ICSFAAAGDCPRGNQCPHMHGDLCNTCGKKCLHPFRPEEREEHTKECEKKQKHIEALKQS 165
Query: 458 QN 463
Q+
Sbjct: 166 QD 167
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +3
Query: 120 ICRKFLKGICHE-DTCLLSHDITSEKMPTCYFYLKGMC 230
+C+ F+ G C + + C SHD C FY K +C
Sbjct: 6 LCKFFVHGSCLKGENCEFSHDSKDPPNNVCTFYQKRIC 43
>At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1
protein (ZFWD1) identical to zfwd1 protein (GI:12057164)
[Arabidopsis thaliana]
Length = 430
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +2
Query: 254 NVKLNKNSKLCSDFLKGYCERGTKCEYRH 340
N + K KLC ++ G C G KC Y H
Sbjct: 98 NRTVTKTEKLCKFWVDGNCPYGDKCRYLH 126
>At3g55980.1 68416.m06220 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
PF00023: Ankyrin repeat
Length = 580
Score = 30.7 bits (66), Expect = 1.2
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2
Query: 284 CSDFLKGYCERGTKCEYRH 340
C +F KG C +G CEY H
Sbjct: 257 CPEFRKGSCPKGDSCEYAH 275
>At2g40140.1 68415.m04937 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
PF00023: Ankyrin repeat
Length = 597
Score = 30.7 bits (66), Expect = 1.2
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2
Query: 284 CSDFLKGYCERGTKCEYRH 340
C +F KG C +G CEY H
Sbjct: 260 CPEFRKGSCPKGDSCEYAH 278
>At2g47680.1 68415.m05955 zinc finger (CCCH type) helicase family
protein similar to SP|Q28141 ATP-dependent RNA helicase
A (Nuclear DNA helicase II) (DEAD-box protein 9) {Bos
taurus}; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 1015
Score = 30.3 bits (65), Expect = 1.5
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 281 LCSDFLKGYCERGTKCEYRH 340
+C FL GYC RG +C + H
Sbjct: 732 VCVYFLNGYCNRGGQCTFTH 751
>At5g60040.1 68418.m07529 DNA-directed RNA polymerase, putative
similar to SP|P04051 DNA-directed RNA polymerase III
largest subunit (EC 2.7.7.6) {Saccharomyces cerevisiae};
contains InterPro accession IPR000722: RNA polymerase,
alpha subunit
Length = 1328
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -3
Query: 569 RFPSLHRIGFITPQSALVSSSLV*CPDSICNPYFFHFD 456
R PSLHR+ + ++ ++ + +S+CNPY FD
Sbjct: 464 RQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFD 501
>At5g59930.1 68418.m07515 DC1 domain-containing protein / UV-B
light-insensitive protein, putative similar to ULI3
(UV-B light insensitive) [Arabidopsis thaliana]
GI:17225050; contains Pfam profile PF03107: DC1 domain
Length = 656
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -2
Query: 153 HDKYLLKICDKWPH-VFYHAKIYNFLLFVVCI 61
+DK +C + PH + YH I NF L + CI
Sbjct: 192 NDKKTCFLCGQQPHGILYHCSICNFTLCIGCI 223
>At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2
protein (ZFWD2), putative 99.8% identical to zfwd2
protein (GI:12057166) [Arabidopsis thaliana]; contains 6
copies (2 weak) Pfam PF00400: WD domain, G-beta repeat;
contains Pfam PF00642: Zinc finger C-x8-C-x5-C-x3-H type
(and similar) domain
Length = 437
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 254 NVKLNKNSKLCSDFLKGYCERGTKCEYRH 340
N + K K+C+ ++ G C G KC Y H
Sbjct: 105 NRTVTKTEKVCNFWVDGNCTYGDKCRYLH 133
>At2g17010.1 68415.m01961 mechanosensitive ion channel
domain-containing protein / MS ion channel
domain-containing protein contains Pfam profile PF00924:
Mechanosensitive ion channel
Length = 779
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +2
Query: 311 ERGTKCEYRHVNITNETKKRLMR-TKQITLLKVKNQHTEKPNKNESVEESQNER 469
+R T+ H NI+ KRLM+ + ++L + Q E ++ES + ++E+
Sbjct: 404 QRETRSRMNHKNISAWNMKRLMKIVRNVSLTTLDEQMLESTYEDESTRQIRSEK 457
>At5g56900.2 68418.m07101 CwfJ-like family protein / zinc finger
(CCCH-type) family protein contains Pfam domain,
PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and
similar), PF04677: Protein similar to CwfJ C-terminus 1,
PF04676: Protein similar to CwfJ C-terminus 2
Length = 593
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/21 (47%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = +2
Query: 281 LCSDFL-KGYCERGTKCEYRH 340
+C D + KG CE+G +C Y+H
Sbjct: 337 VCLDLIIKGKCEKGPECSYKH 357
>At5g56900.1 68418.m07100 CwfJ-like family protein / zinc finger
(CCCH-type) family protein contains Pfam domain,
PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and
similar), PF04677: Protein similar to CwfJ C-terminus 1,
PF04676: Protein similar to CwfJ C-terminus 2
Length = 404
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/21 (47%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = +2
Query: 281 LCSDFL-KGYCERGTKCEYRH 340
+C D + KG CE+G +C Y+H
Sbjct: 148 VCLDLIIKGKCEKGPECSYKH 168
>At3g12130.1 68416.m01509 KH domain-containing protein / zinc finger
(CCCH type) family protein
Length = 248
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 266 NKNSKLCSDFLKGYCERGTKCEYRH 340
N +K+C F KG C G +C + H
Sbjct: 213 NFKTKICERFSKGNCTFGDRCHFAH 237
>At5g64070.1 68418.m08046 phosphatidylinositol 4-kinase (PI4K)
nearly identical to gi:4467359
Length = 1121
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +2
Query: 425 KPNKNESVEESQNERNMDCRYYRDIKP-NSKIPKQI 529
+ +KNE E + N + +RD KP + K+PK++
Sbjct: 342 RESKNEDEESNPNSEGFFKKLFRDSKPEDDKVPKEV 377
>At5g06770.1 68418.m00765 KH domain-containing protein / zinc finger
(CCCH type) family protein contains Pfam domains
PF00013: KH domain and PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 240
Score = 28.7 bits (61), Expect = 4.6
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +2
Query: 266 NKNSKLCSDFLKGYCERGTKCEYRH 340
N +K+C + KG C G +C + H
Sbjct: 205 NYKTKICDRYSKGNCTYGDRCHFAH 229
>At2g19640.2 68415.m02295 SET domain-containing protein contains
Pfam profile PF00856: SET domain
Length = 398
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 153 EDTCLLSHDITSEKMPTCYFYLKGMCTKENC 245
E+ C D S P YF+++ MC KENC
Sbjct: 334 EEVCGNGVDDESN-FPHAYFFVRYMCEKENC 363
>At5g38150.1 68418.m04598 expressed protein
Length = 574
Score = 27.9 bits (59), Expect = 8.1
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Frame = +2
Query: 245 SLFNVKLNKNSKLCSDFLKGYCERGTKCEYRHVNITNETKKRLMRTKQITLLKVKNQHTE 424
SL +K ++N+ +FL + TK E + + + K+ + +K L KVK+
Sbjct: 348 SLEKIKKSRNAAKKEEFLFKEEKTVTKAETQKTKLDIDKKESELNSKLDELEKVKHTEAL 407
Query: 425 KPNKNES-VEESQNERNMDCRY 487
K ES VE+ R M+ +
Sbjct: 408 VLEKLESLVEDMMESREMESEH 429
>At3g52980.1 68416.m05840 RNA recognition motif (RRM)-containing
protein predicted proteins, Arabidopsis thaliana
Length = 381
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 278 KLCSDFLKGYCERGTKCEYRHVNITNE 358
K+C F KG+C+ G C H N+++E
Sbjct: 168 KICHYFNKGFCKHGNNC---HNNLSDE 191
>At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM), PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 540
Score = 27.9 bits (59), Expect = 8.1
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +2
Query: 284 CSDFLKGYCERGTKCEYRH 340
CS F +G+C+ G C + H
Sbjct: 154 CSYFARGFCKNGASCRFVH 172
>At2g33835.1 68415.m04152 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 587
Score = 27.9 bits (59), Expect = 8.1
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 284 CSDFLKGYCERGTKCEYRHV 343
C F KG+C G C++ HV
Sbjct: 102 CKFFAKGWCFNGVSCKFLHV 121
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,580,797
Number of Sequences: 28952
Number of extensions: 340820
Number of successful extensions: 1033
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1775300800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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