Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0781.Seq
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    29   0.53 
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p...    29   0.92 
SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ...    29   0.92 
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    27   2.1  
SPBC9B6.08 |clc1||clathrin light chain|Schizosaccharomyces pombe...    27   2.8  
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    27   3.7  
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom...    26   4.9  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    26   6.5  
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|...    26   6.5  

>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 425 FQILELVLALHSCWQL*FWKSVLHVICTVL 514
           F +L L  A H C  + FWK++   +CT +
Sbjct: 411 FLVLHLTQAFHVCPSVTFWKTLFMSLCTAI 440


>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 555

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = +2

Query: 635 FLFEYCC-WSGSQWSIIQQTVSIK 703
           FLF YCC W    W I+ +T  I+
Sbjct: 375 FLFSYCCSWGPMGWVIVGETFPIR 398


>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 557

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = +2

Query: 635 FLFEYCC-WSGSQWSIIQQTVSIK 703
           FLF YCC W    W I+ +T  I+
Sbjct: 375 FLFSYCCSWGPMGWVIVGETFPIR 398


>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -3

Query: 618 RSKYGEKYKRTDSKRKMLRKNKRSKKCFR*PRKNWR 511
           RS      +R+D+++    K + S++ +R  R NWR
Sbjct: 178 RSNQDRSRERSDNEQHSSDKREHSRRSYRNDRNNWR 213


>SPBC9B6.08 |clc1||clathrin light chain|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 229

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 14/71 (19%), Positives = 31/71 (43%)
 Frame = -2

Query: 643 KQEREEPEKIKIWREVQKNRFXXXXXXXXXXXXEMLQIAKKELEDGTNHMKNRFPKLKLP 464
           + E  +PE ++ W+E Q  R               ++ A+K ++D   +  ++  K+   
Sbjct: 100 EDESGDPEPVRKWKEDQMKRIQERDESSKKLRESNIEKARKAIDDFYENFNDKRDKVIAK 159

Query: 463 TGMQSEHKLED 431
           +  + E  LE+
Sbjct: 160 SRKEQEKLLEE 170


>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -2

Query: 307 DLAQTTHHVLLKWLEITSSLYNILLYYQSAFEDHINYFYKY 185
           D     H +LLK L     L N +L YQ+ F +  N+   Y
Sbjct: 328 DYFYDVHSLLLKNLSSKIKLCNHILMYQATFNEVKNFLQTY 368


>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +1

Query: 340 KRATSLPRRGPKSQSSETRAHSFPSSTLLSDPRACARSAFLLAALVLEI-CSSCDLYRPP 516
           K +T+ P   P++  S T   + P S +  D +    S    +  V  + C +C LYRPP
Sbjct: 134 KCSTADPGILPRNAYSLTYNPAHPWSVIPEDRKVLVGSTRSDSVFVNTVYCHTCHLYRPP 193


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +1

Query: 451 SAFLLAALVLEICSSCDLYRPPVLSWLSEAFLASFVLPQHLSLR--IGSFVLLA 606
           SAF L  L ++      +Y PP+L +LS    A F+    + L   IG F+ ++
Sbjct: 548 SAFSLRQLSIKYPKELSIYLPPILDYLSVG-NADFIFGYTIGLASIIGGFLSIS 600


>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
           Mts4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 392 PGPIHFLPPHYFQILEL 442
           P P+ FL PHYF ++++
Sbjct: 94  PKPLKFLRPHYFTLVKI 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,926,725
Number of Sequences: 5004
Number of extensions: 60780
Number of successful extensions: 201
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)