Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0781.Seq
(743 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1369 + 29620958-29621030,29622421-29622452,29622538-296225... 32 0.42
02_04_0516 + 23593088-23593116,23593209-23593336,23593527-235937... 31 0.73
03_05_0625 - 26225201-26225879,26226706-26227553 31 1.3
09_06_0056 - 20561645-20561920,20562024-20562611,20562698-205630... 30 1.7
09_03_0080 + 12149885-12150842,12150936-12151007,12151129-121513... 30 2.2
03_05_0510 + 25039408-25039455,25040627-25040641,25040832-250409... 29 2.9
12_02_0635 - 21430245-21431156 28 6.8
11_06_0631 - 25656885-25657000,25658591-25658658,25658957-256589... 28 6.8
07_03_0234 + 15561003-15561482,15562495-15562590,15562663-15562758 28 6.8
07_01_0866 - 7195305-7195756,7197171-7197447 28 9.0
>06_03_1369 +
29620958-29621030,29622421-29622452,29622538-29622598,
29622695-29622711,29622916-29623250,29623329-29623686,
29623784-29624371,29624664-29624939
Length = 579
Score = 32.3 bits (70), Expect = 0.42
Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 6/107 (5%)
Frame = -2
Query: 478 KLKLPTGMQSE-HKLEDLKVVWRKEMNGPGFLSFVTLDPVEEGMWHAYG---QLCFSSSK 311
K K TG+ + + + +++W+ PG L+F L + WH G S+
Sbjct: 474 KKKDITGIYHKWQNMNENRLLWKLGTLPPGLLTFYKLTHPLDKSWHVLGLGYNPSIERSE 533
Query: 310 LDLAQTTHH--VLLKWLEITSSLYNILLYYQSAFEDHINYFYKYKTG 176
+D A H+ + WLEI S Y+ + +INY + Y G
Sbjct: 534 IDNAAVIHYNGNMKPWLEIAMS------KYRPYWTKYINYEHTYVRG 574
>02_04_0516 +
23593088-23593116,23593209-23593336,23593527-23593714,
23593861-23593919,23594997-23595345,23596081-23596333,
23596404-23597476
Length = 692
Score = 31.5 bits (68), Expect = 0.73
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = -3
Query: 669 WDPLQQQYSNKNVRNLRRSKYGEKYKRTDSKRKMLRKNKRSKK 541
W+P+ + K + ++ K +K K+ K+K +K K+ KK
Sbjct: 62 WNPVVMKKKKKKKKKKKKKKKKKKKKKNKKKKKKKKKKKKKKK 104
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Frame = -3
Query: 654 QQYSNKNVRN---LRRSKYGEKYKRTDSKRKMLRKNKRSKK 541
+ Y +N+ N +++ K +K K+ K+K +KNK+ KK
Sbjct: 54 ENYQQENIWNPVVMKKKKKKKKKKKKKKKKKKKKKNKKKKK 94
>03_05_0625 - 26225201-26225879,26226706-26227553
Length = 508
Score = 30.7 bits (66), Expect = 1.3
Identities = 27/88 (30%), Positives = 36/88 (40%)
Frame = +1
Query: 358 PRRGPKSQSSETRAHSFPSSTLLSDPRACARSAFLLAALVLEICSSCDLYRPPVLSWLSE 537
PRR P+ +S +FP+ L DP A +R L CS+C PP S S
Sbjct: 149 PRRPPRMGAS-----TFPADFLAYDPAASSRYEVLSVTCFRRRCSACSCCLPPPGSGTSS 203
Query: 538 AFLASFVLPQHLSLRIGSFVLLAIF*SS 621
+ VL S S L ++ SS
Sbjct: 204 SSGEERVLLDEFSEWPPSLQTLDVYSSS 231
>09_06_0056 -
20561645-20561920,20562024-20562611,20562698-20563055,
20563149-20563483,20563593-20563633,20563722-20563932,
20564289-20564348,20564432-20564457,20565066-20565264
Length = 697
Score = 30.3 bits (65), Expect = 1.7
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Frame = -2
Query: 478 KLKLPTGMQSE-HKLEDLKVVWRKEMNGPGFLSFVTLDPVEEGMWHAYG---QLCFSSSK 311
K K TG+ + + + +V+W+ PG L+F L + WH G S+
Sbjct: 592 KKKDITGIYHKWQSMNEDRVLWKLGTLPPGLLTFYKLTHPLDKSWHVLGLGYNPSIDRSE 651
Query: 310 LDLAQTTHH--VLLKWLEITSSLY 245
+D A H+ + WLE+ + Y
Sbjct: 652 IDNAAVVHYNGNMKPWLELAMTKY 675
>09_03_0080 +
12149885-12150842,12150936-12151007,12151129-12151346,
12153607-12153830,12154004-12154592
Length = 686
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = +1
Query: 373 KSQSSETRAHSFPSSTLLSDPRACARSAFLLAALVLEICSSCDLYRPPVLS 525
KS++S + + +S S + + +AFL L LE CSS D + P V+S
Sbjct: 90 KSEASTSVTVTINTSQASSVQKEQSVTAFLPPPLQLEFCSSWDFFDPTVVS 140
>03_05_0510 +
25039408-25039455,25040627-25040641,25040832-25040991,
25041116-25041192,25041324-25042528,25042537-25042621,
25043068-25043130,25043207-25043263,25043299-25043361,
25043560-25043643,25043730-25044320,25044535-25044663
Length = 858
Score = 29.5 bits (63), Expect = 2.9
Identities = 23/81 (28%), Positives = 34/81 (41%)
Frame = -1
Query: 593 KEPIRRERC*GRTKEARNASDSQERTGGRYKSHEEQISKTKXXXXXXXXXXXRGSESSVE 414
+E +R R R ++ R D++ + G+ K E + S K S VE
Sbjct: 254 EEQQQRLRLRLRLRQRREQEDNKSTSNGKRKREEAESSMDKSRAARKKKAKTYKSPKKVE 313
Query: 413 EGNEWARVSELCDFGPRRGRD 351
+ RV E D PRRG+D
Sbjct: 314 K----RRVVEAKDGDPRRGKD 330
>12_02_0635 - 21430245-21431156
Length = 303
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = -3
Query: 369 TPSRK--GCGTLTVNCASAQASWISPKLPITC 280
TP R GC LT+ C+ S+ SP P++C
Sbjct: 272 TPPRPYVGCPRLTIPCSCENQSFKSPAKPLSC 303
>11_06_0631 -
25656885-25657000,25658591-25658658,25658957-25658996,
25659742-25659820,25659918-25661707,25662030-25662037,
25662305-25662367,25662504-25662820
Length = 826
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = -2
Query: 364 VEEGMWHAYGQLCFSSSKLDLA--QTTHHVLLKWLEITSSLYNILLYY 227
V G A QLCF SS+ A +LL W +++S +ILL Y
Sbjct: 733 VNSGRRSADVQLCFQSSRTLEATMDRVSSILLSWEDLSSGREDILLVY 780
>07_03_0234 + 15561003-15561482,15562495-15562590,15562663-15562758
Length = 223
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +1
Query: 337 RKRATSLPRRGPKSQSSETRAHSFPSSTLLSDPRACARS 453
R RAT+ P+ S++ +AHSF S P A AR+
Sbjct: 3 RPRATTAAASRPRRASTKPKAHSFLSPVAPPPPSARARA 41
>07_01_0866 - 7195305-7195756,7197171-7197447
Length = 242
Score = 27.9 bits (59), Expect = 9.0
Identities = 20/65 (30%), Positives = 27/65 (41%)
Frame = +1
Query: 283 RDG*FGRDPACLS*STIDRKRATSLPRRGPKSQSSETRAHSFPSSTLLSDPRACARSAFL 462
R+G DP LS T D + + RR P RA S + + P C +SA
Sbjct: 6 REGKRSPDPPLLSPPTADPRERETKRRRDPGVGGGSARAASTAWNRCMRRPCRCPQSATA 65
Query: 463 LAALV 477
L L+
Sbjct: 66 LLHLL 70
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,109,968
Number of Sequences: 37544
Number of extensions: 375157
Number of successful extensions: 1134
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1134
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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