Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0781.Seq
         (743 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10079| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   7e-04
SB_26062| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   0.32 
SB_13048| Best HMM Match : Fork_head (HMM E-Value=0)                   33   0.32 
SB_23845| Best HMM Match : IL6 (HMM E-Value=1.2)                       31   1.3  
SB_21511| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.74)           31   1.3  
SB_56828| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_31736| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_9129| Best HMM Match : efhand (HMM E-Value=0.075)                   30   2.3  
SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_35033| Best HMM Match : GST_C (HMM E-Value=0.08)                    29   3.0  
SB_1490| Best HMM Match : fn3 (HMM E-Value=1.9e-20)                    29   3.0  
SB_32355| Best HMM Match : Laminin_EGF (HMM E-Value=0)                 29   4.0  
SB_42837| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_35222| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_33166| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  
SB_27376| Best HMM Match : Neur_chan_memb (HMM E-Value=1.6e-05)        28   9.2  

>SB_10079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 56

 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 19/36 (52%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
 Frame = -1

Query: 410 GNEWARVSELCDFGP---RRGRDVARLRSIVLQLKQ 312
           G EW +V   CDF P   +  +DV+R+RSI LQLKQ
Sbjct: 18  GTEWEKVCRACDFNPKATKNTKDVSRMRSIFLQLKQ 53


>SB_26062| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1535

 Score = 25.8 bits (54), Expect(2) = 0.32
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -3

Query: 621  RRSKYGEKYKRTDSKRKMLRKNKRSK-KCFR*PRKNWR 511
            R  K GEK  R DS  ++ R  KRS  K +R  +K+W+
Sbjct: 1104 RLRKKGEKANRWDSFTRLQRNEKRSDFKNWR-KKKHWK 1140



 Score = 25.4 bits (53), Expect(2) = 0.32
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -3

Query: 681  MMLHWDPLQQQYSNKNVRNLRRSKYG 604
            +++ W+ ++++Y NK V+  R  K G
Sbjct: 1057 VIMEWNAMKRKYENKKVKTKRLRKKG 1082


>SB_13048| Best HMM Match : Fork_head (HMM E-Value=0)
          Length = 311

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
 Frame = -2

Query: 526 KKELEDGTNHMKNRFP--KLKLPTGMQS-EHKLE--DLKVVWRKEMNGPGFLSFVTLDPV 362
           K  L D    +K RFP  + K P+   S  H L   D  V   +E   PG  ++ TLDP 
Sbjct: 84  KLTLSDICEFIKRRFPYYREKFPSWQNSIRHNLSLNDCFVKMPREPGNPGKGNYWTLDPA 143

Query: 361 EEGMW 347
            EGM+
Sbjct: 144 SEGMF 148


>SB_23845| Best HMM Match : IL6 (HMM E-Value=1.2)
          Length = 1388

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = +1

Query: 310 ACLS*STIDRKRATSLPRRGPKSQSSETRAHSFPSSTLLSDPRACARS 453
           A ++  TI R   T+LP   P S++  +R  +  SST+L+  RA  R+
Sbjct: 544 AFITLKTISRNSLTNLPADSPTSRNPRSRESAKRSSTVLNSVRAKKRN 591


>SB_21511| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.74)
          Length = 437

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = -3

Query: 741 GLTILSKYPVHQHLMLTVCWMMLHWDPLQQQYSNKNVRNLRRSKYGEKYKRTDSKRK 571
           GL +  K      LM T  W  L   P Q   + K+ +N    K   + K+T+SKR+
Sbjct: 378 GLEVSCKCMSDPALMFTQEWQTLDHQPKQTDKARKSSKNNGGKKKTNRRKKTNSKRR 434


>SB_56828| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 525

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -2

Query: 670 LGSTPTTVFKQEREE 626
           +G TP T+FKQEREE
Sbjct: 209 IGETPVTIFKQEREE 223


>SB_31736| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1095

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 490 SSCDLYRPPVLSWLSEAFLASFVL 561
           SSCD   P +L W ++AF  +FV+
Sbjct: 12  SSCDANFPQILPWYTDAFTVTFVI 35


>SB_9129| Best HMM Match : efhand (HMM E-Value=0.075)
          Length = 443

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -3

Query: 219 LSKITLIIFINIRQANINNVQAKHN 145
           LSKI +I+F+NI Q  + N++ + N
Sbjct: 246 LSKIQMIVFVNILQLRVPNIEERFN 270


>SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 919

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +1

Query: 367 GPKSQSSETRAHSFPSSTLLSDPRACARSA 456
           GP+++SS TR  SFPSS +      C RS+
Sbjct: 470 GPRNKSSITRVASFPSSLISDIFGGCLRSS 499


>SB_35033| Best HMM Match : GST_C (HMM E-Value=0.08)
          Length = 240

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
 Frame = -2

Query: 457 MQSEHKLEDLKVVWRKEM---NGPGFLSFVTLDPVEEGMWHAYGQL 329
           M ++ +L D    WR  +   N PG    V LD ++ G W  + Q+
Sbjct: 178 MCNKKRLSDFPNTWRHTLDIYNMPGIADTVNLDHIKAGYWEGFPQV 223


>SB_1490| Best HMM Match : fn3 (HMM E-Value=1.9e-20)
          Length = 421

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 7/48 (14%)
 Frame = -2

Query: 463 TGMQSEHKLEDLKVVWRKEMNGPGFLSFVT-------LDPVEEGMWHA 341
           TG+ S+  + D++V  +    GPG +S  T       L P+E+G WHA
Sbjct: 6   TGLFSDEGV-DVRVEGKAPSKGPGIISSTTNSSITLELKPIEKGHWHA 52


>SB_32355| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 1358

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 660 LQQQYSNKNVRNLRRSKYGEKYKRTDSKRKMLRKNKRSKK 541
           L Q +    +R   RSK  +K K+   K+K  +K K+ KK
Sbjct: 51  LWQNFGELRIRKPVRSKKKKKKKKKKKKKKKKKKKKKKKK 90


>SB_42837| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 131

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = -3

Query: 663 PLQQQYSNKNVRNLRRSKYGEKYKRTDSKRKMLRKNKRSKK 541
           P++++Y  +     +R K  +K K+   K+K  +KNK++KK
Sbjct: 8   PMRREYREEK----KRKKKKQKKKKKKKKKKKKKKNKKNKK 44


>SB_35222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 267

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -1

Query: 422 SVEEGNEWARVSELCDFG 369
           SV+EG +W R S L DFG
Sbjct: 154 SVKEGRKWQRTSPLSDFG 171


>SB_33166| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -3

Query: 615 SKYGEKYKRTDSKRKMLRKNKRSKKC 538
           S Y  KYK++  KR+++R+ K  ++C
Sbjct: 24  SLYLRKYKKSAEKRRLVRRRKNYQRC 49


>SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3669

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
 Frame = +1

Query: 298 GRDPACLS*STIDRKRAT-SLPRRGPKSQSSETRAHSFPSSTLLSDPRACARSAFLLAAL 474
           GR P C+S +T      T +  +  P S ++ T   +   +T  +   + + S  ++   
Sbjct: 122 GRVPRCISPTTETLTTETIAASQLTPSSSATTTTIRTNTKTTESAITTSLSTSLPVILPS 181

Query: 475 VLEICSSCDLYRPPVLSWL 531
           V + C SC  +   ++SWL
Sbjct: 182 VDKECESCYSFHDDIMSWL 200


>SB_27376| Best HMM Match : Neur_chan_memb (HMM E-Value=1.6e-05)
          Length = 181

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = -3

Query: 246 IISYYIISPLSKITLIIFINIRQANINNVQAKHNSGLEPCYLLKLFCIYYVMAN 85
           I+  ++++ L  ++LI+ I I    I+     H  G+ P ++ KLFC+    AN
Sbjct: 46  ILDVFLMATLVMVSLILMITIFVLVIH-----HKEGVPPPWIQKLFCVKPKPAN 94


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,252,666
Number of Sequences: 59808
Number of extensions: 434479
Number of successful extensions: 1254
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1253
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)