Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0781.Seq
         (743 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g35240.1 68414.m04370 transcriptional factor B3 family protei...    36   0.037
At5g58580.1 68418.m07341 zinc finger (C3HC4-type RING finger) fa...    32   0.46 
At5g19120.1 68418.m02275 expressed protein low similarity to ext...    31   0.81 
At5g45000.1 68418.m05518 Toll-Interleukin-Resistance (TIR) domai...    29   2.5  
At4g33650.1 68417.m04780 dynamin-like protein 2a (ADL2a) identic...    29   4.3  
At1g79990.1 68414.m09356 coatomer protein complex, subunit beta ...    27   9.9  

>At1g35240.1 68414.m04370 transcriptional factor B3 family protein /
           auxin-responsive factor AUX/IAA-related contains Pfam
           profiles: PF02309 AUX/IAA family, PF02362: B3 DNA
           binding domain
          Length = 615

 Score = 35.5 bits (78), Expect = 0.037
 Identities = 23/62 (37%), Positives = 30/62 (48%)
 Frame = +1

Query: 397 AHSFPSSTLLSDPRACARSAFLLAALVLEICSSCDLYRPPVLSWLSEAFLASFVLPQHLS 576
           A + P S+LL + R      +LL  LVL  CSS     PP+L+   E    S   P + S
Sbjct: 357 ALNVPRSSLLKNKRLRETLEYLLNILVLYTCSSSSHILPPILTQGQEIGQLSVASPMNTS 416

Query: 577 LR 582
           LR
Sbjct: 417 LR 418


>At5g58580.1 68418.m07341 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 308

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = -2

Query: 742 GFDDFVEVPSASAFDANGLLDDAPLGSTPTTVFKQEREEPEK 617
           GFDD V  P+A+A   +  LD + + S P  V+++  EE ++
Sbjct: 93  GFDDGVSSPAATATRDDKGLDSSVISSIPLFVYEENEEEEDE 134


>At5g19120.1 68418.m02275 expressed protein low similarity to
           extracellular dermal glycoprotein EDGP precursor [Daucus
           carota] GI:285741, SP|P13917 Basic 7S globulin precursor
           {Glycine max}
          Length = 386

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = +3

Query: 588 FFCTSRHIL----IFSGSSRSCLNTVVGVDPNGASSNRPLASNAD 710
           F C+SRH+     + SGSS  CL   VG +   +SS+     NAD
Sbjct: 71  FDCSSRHVSSSRNLISGSSSGCLKAKVGNERVSSSSSSRKDQNAD 115


>At5g45000.1 68418.m05518 Toll-Interleukin-Resistance (TIR)
           domain-containing protein domain signature TIR exists,
           suggestive of a disease resistance protein.
          Length = 371

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -2

Query: 736 DDFVEVPSASAFDANGLLD-DAPLGSTPTTVFKQEREEPEKIKIWRE 599
           D+ V +P     DA      + P G     + +  R EPE+IK W+E
Sbjct: 98  DELVVIPIFYRLDATNCKRLEGPFGDNFRNLERDYRSEPERIKKWKE 144


>At4g33650.1 68417.m04780 dynamin-like protein 2a (ADL2a) identical
           to dynamin like protein 2a (ADL2a) [Arabidopsis
           thaliana] GI:19032337; supported by cDNA gi:19032336
          Length = 808

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 21/47 (44%), Positives = 25/47 (53%)
 Frame = -1

Query: 434 GSESSVEEGNEWARVSELCDFGPRRGRDVARLRSIVLQLKQAGSRPN 294
           GS+SS +     A V    DF PR G D+   R +VLQL Q  SR N
Sbjct: 66  GSQSSGKSSVLEALVGR--DFLPR-GNDICTRRPLVLQLLQTKSRAN 109


>At1g79990.1 68414.m09356 coatomer protein complex, subunit beta 2
           (beta prime), putative contains 7 WD-40 repeats
           (PF00400) (1 weak); similar to Coatomer beta' subunit
           (Beta'-coat protein) (Beta'-COP) (p102) (SP:P35606)
           [Homo sapiens]; similar to Coatomer beta' subunit
           (Beta'-coat protein) (Beta'-COP) (p102) (SP:O55029) [Mus
           musculus]
          Length = 920

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 379 VTLDPVEEGMWHAYGQLCFSSSKLDLAQ 296
           + ++   E  W   G+L  SS KLD+A+
Sbjct: 660 IAVEAQNESKWKQLGELAMSSGKLDMAE 687


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,041,571
Number of Sequences: 28952
Number of extensions: 316388
Number of successful extensions: 1043
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1043
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)