Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0780.Seq
         (723 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomy...    94   2e-20
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||...    27   3.6  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        26   4.7  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    25   8.3  
SPAC27F1.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.3  

>SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 93.9 bits (223), Expect = 2e-20
 Identities = 47/84 (55%), Positives = 58/84 (69%)
 Frame = +1

Query: 4   FDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAG 183
           F+QAAA+VK LK  P   +LL LYA FKQATVGD +   +PGLLDLKGK K++AW +L G
Sbjct: 5   FEQAAADVKELKETPNSDELLKLYALFKQATVGDNN-TEKPGLLDLKGKFKWNAWEELKG 63

Query: 184 TSKDDAQKAYIEIVEGLIASIGLK 255
            SK+DA   YI  V+ L    G+K
Sbjct: 64  KSKEDAASEYISFVDELKTKYGMK 87


>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 710

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 19/73 (26%), Positives = 33/73 (45%)
 Frame = +1

Query: 43  LPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAGTSKDDAQKAYIEI 222
           LP +   ++LY HFKQA V      ++   LD +G    +       + ++  +K     
Sbjct: 210 LPAEVTPIDLYNHFKQAGVVKGTAVSQ--FLDQRGFRYGEVIMDSVESCQNAIEKLNNVP 267

Query: 223 VEGLIASIGLKNK 261
            +G I  + +KNK
Sbjct: 268 YKGSILEVSIKNK 280


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
 Frame = +1

Query: 4    FDQAAANVKNLKALPTDAQLLNLYAHFKQ--ATVGDADPANRPGLLD-LKGKAKFDAWHK 174
            F Q AA+++    +  DA LLN+Y +F+Q  + V +A    +  L + +K +    +W  
Sbjct: 3302 FSQHAASLRICHGI--DAMLLNIYHYFEQFLSKVSEAIHTQKQSLENSIKERILLMSWKD 3359

Query: 175  L-AGTSKDDAQKAYIEIVEGL 234
                  K+ A+K++ E+ + L
Sbjct: 3360 TNVYALKESAKKSHAELFKVL 3380


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 384 HFCLKCFFFKNTNSY 428
           H+CLKCF  K   SY
Sbjct: 400 HYCLKCFQVKPPRSY 414


>SPAC27F1.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = +3

Query: 309 VYYINTRAFSHHQRTSDF----FDAIFILHFCLKCFFFKNTNSY 428
           +Y+  T A S  ++   +    FD+ F+  + + CFF  + N++
Sbjct: 54  LYFKLTEAISFTEKCEKYNISLFDSTFVFGYIVNCFFIIHLNTF 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,631,558
Number of Sequences: 5004
Number of extensions: 51254
Number of successful extensions: 130
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)