Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0780.Seq
         (723 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0417 - 3692247-3692329,3692442-3692504,3693233-3693350,369...    61   1e-09
03_05_0107 - 20883353-20883627,20883739-20883801,20884608-208847...    60   2e-09
06_01_0108 - 860080-860162,860276-860338,860857-860974,861481-86...    56   2e-08
04_04_1623 - 34846056-34846223,34846547-34846644,34846738-348468...    54   1e-07
11_01_0374 - 2843405-2843508,2844134-2844239,2844327-2844409,284...    28   8.6  

>08_01_0417 -
           3692247-3692329,3692442-3692504,3693233-3693350,
           3694084-3694095
          Length = 91

 Score = 60.9 bits (141), Expect = 1e-09
 Identities = 32/78 (41%), Positives = 46/78 (58%)
 Frame = +1

Query: 4   FDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAG 183
           F+Q A   K L    ++   L LY  +KQATVGD + A RPG+   + +AK+DAW  + G
Sbjct: 7   FEQYAEKAKTLPESTSNENKLILYGLYKQATVGDVNTA-RPGIFAQRDRAKWDAWKAVEG 65

Query: 184 TSKDDAQKAYIEIVEGLI 237
            SK++A   YI  V+ L+
Sbjct: 66  KSKEEAMSDYITKVKQLL 83


>03_05_0107 -
           20883353-20883627,20883739-20883801,20884608-20884725,
           20885012-20885023
          Length = 155

 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 31/77 (40%), Positives = 46/77 (59%)
 Frame = +1

Query: 4   FDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAG 183
           F++ A  VK L    ++   L LY  +KQATVGD +  +RPG+   + +AK+DAW  + G
Sbjct: 7   FEEYAEKVKTLPESTSNEDKLILYGLYKQATVGDVN-TSRPGIFAQRDRAKWDAWKAVEG 65

Query: 184 TSKDDAQKAYIEIVEGL 234
            SK++A   YI  V+ L
Sbjct: 66  KSKEEAMSDYITKVKQL 82


>06_01_0108 -
           860080-860162,860276-860338,860857-860974,861481-861492
          Length = 91

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 30/79 (37%), Positives = 45/79 (56%)
 Frame = +1

Query: 1   KFDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLA 180
           +F++ A   K L    ++   L LY  +KQATVG      RPG+ +LK + K+DAW  + 
Sbjct: 6   EFEEFAEKAKTLPDTISNEDKLLLYGLYKQATVGPVT-TGRPGIFNLKDRYKWDAWKAVE 64

Query: 181 GTSKDDAQKAYIEIVEGLI 237
           G SK++A   YI  V+ L+
Sbjct: 65  GKSKEEAMADYITKVKQLL 83


>04_04_1623 -
           34846056-34846223,34846547-34846644,34846738-34846829,
           34847096-34847202,34847385-34847490,34848108-34848547
          Length = 336

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
 Frame = +1

Query: 16  AANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAGTSKD 195
           AA+  +  ++P  AQL  LY  +K AT G    A +P  L LK +AK++AWHKL     +
Sbjct: 102 AASAASGTSVPEQAQL-QLYGLYKIATEGPCT-APQPSALKLKARAKWNAWHKLGAMPTE 159

Query: 196 DAQKAYIEIVEGLIA--SIGLKNKR 264
           +A + YI +V+ L    S+G   KR
Sbjct: 160 EAMQKYITVVDELFPNWSMGSSTKR 184


>11_01_0374 -
           2843405-2843508,2844134-2844239,2844327-2844409,
           2844886-2845078,2845527-2845662,2846185-2846264,
           2846348-2846932,2847058-2847126,2847203-2847347,
           2847442-2847542,2848208-2849066,2849397-2849536,
           2849606-2849783,2849885-2850287,2850770-2850833,
           2851223-2851278,2851470-2851572
          Length = 1134

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/45 (24%), Positives = 24/45 (53%)
 Frame = -1

Query: 291 HVLASLKIKSFILEADGSYETFDDLDVGFLGIILRSAGQFVPSVK 157
           H++ S ++   +L ++  Y+ F D+  G + ++LR      P V+
Sbjct: 249 HLIVSQELHPALLSSEHEYKVFQDIVGGIMALVLRPQDAQSPLVR 293


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,229,473
Number of Sequences: 37544
Number of extensions: 302008
Number of successful extensions: 640
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)