Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0780.Seq
         (723 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g31812.1 68414.m03905 acyl-CoA binding protein / ACBP identic...    63   2e-10
At4g27780.1 68417.m03990 acyl-CoA binding protein 2 (ACBP2) iden...    45   6e-05
At5g53470.1 68418.m06645 acyl-CoA binding protein, putative / AC...    42   3e-04
At3g05420.2 68416.m00594 acyl-CoA binding family protein similar...    36   0.036
At3g05420.1 68416.m00593 acyl-CoA binding family protein similar...    36   0.036

>At1g31812.1 68414.m03905 acyl-CoA binding protein / ACBP identical
           to acyl-CoA-binding protein (ACBP) [Arabidopsis
           thaliana] SWISS-PROT:P57752
          Length = 92

 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 31/79 (39%), Positives = 47/79 (59%)
 Frame = +1

Query: 1   KFDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLA 180
           +F++ A  V  L  LP++  LL LY  +KQA  G  D  +RPG+  +K +AK+DAW  + 
Sbjct: 6   EFEEHAEKVNTLTELPSNEDLLILYGLYKQAKFGPVD-TSRPGMFSMKERAKWDAWKAVE 64

Query: 181 GTSKDDAQKAYIEIVEGLI 237
           G S ++A   YI  V+ L+
Sbjct: 65  GKSSEEAMNDYITKVKQLL 83


>At4g27780.1 68417.m03990 acyl-CoA binding protein 2 (ACBP2)
           identical to acyl-CoA binding protein 2 [Arabidopsis
           thaliana] gi|12039034|gb|AAG46057
          Length = 354

 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 28/77 (36%), Positives = 40/77 (51%)
 Frame = +1

Query: 4   FDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAG 183
           F   AA  +  + +P+D Q   LY  +K AT G    A +P  L +  +AK+ AW KL  
Sbjct: 114 FVTTAAADRLSQKVPSDVQQ-QLYGLYKIATEGPCT-APQPSALKMTARAKWQAWQKLGA 171

Query: 184 TSKDDAQKAYIEIVEGL 234
              ++A + YIEIV  L
Sbjct: 172 MPPEEAMEKYIEIVTQL 188


>At5g53470.1 68418.m06645 acyl-CoA binding protein, putative / ACBP,
           putative similar to acyl-CoA binding protein 2
           [Arabidopsis thaliana] gi|12039034|gb|AAG46057
          Length = 338

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 26/77 (33%), Positives = 41/77 (53%)
 Frame = +1

Query: 4   FDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAG 183
           F  AAA+ +  + +  + QL  LY  +K AT G    A +P  L +  +AK+ AW KL  
Sbjct: 104 FVAAAASDRLSQKVSNELQL-QLYGLYKIATEGPCT-APQPSALKMTARAKWQAWQKLGA 161

Query: 184 TSKDDAQKAYIEIVEGL 234
              ++A + YI++V  L
Sbjct: 162 MPPEEAMEKYIDLVTQL 178


>At3g05420.2 68416.m00594 acyl-CoA binding family protein similar to
           PIR|S68824|S68824 rngB protein, cytosolic (Dictyostelium
           discoideum); contains Pfam profiles PF00887: Acyl CoA
           binding protein, PF01344: Kelch motif
          Length = 669

 Score = 35.5 bits (78), Expect = 0.036
 Identities = 23/74 (31%), Positives = 39/74 (52%)
 Frame = +1

Query: 7   DQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAGT 186
           D +A NV  +   P D  LL LYA ++QATVG  +   +P       ++K+ +W  L   
Sbjct: 29  DSSAKNV--ISKFPDDTALL-LYALYQQATVGPCN-TPKPSAWRPVEQSKWKSWQGLGTM 84

Query: 187 SKDDAQKAYIEIVE 228
              +A + +++I+E
Sbjct: 85  PSIEAMRLFVKILE 98


>At3g05420.1 68416.m00593 acyl-CoA binding family protein similar to
           PIR|S68824|S68824 rngB protein, cytosolic (Dictyostelium
           discoideum); contains Pfam profiles PF00887: Acyl CoA
           binding protein, PF01344: Kelch motif
          Length = 668

 Score = 35.5 bits (78), Expect = 0.036
 Identities = 23/74 (31%), Positives = 39/74 (52%)
 Frame = +1

Query: 7   DQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAGT 186
           D +A NV  +   P D  LL LYA ++QATVG  +   +P       ++K+ +W  L   
Sbjct: 29  DSSAKNV--ISKFPDDTALL-LYALYQQATVGPCN-TPKPSAWRPVEQSKWKSWQGLGTM 84

Query: 187 SKDDAQKAYIEIVE 228
              +A + +++I+E
Sbjct: 85  PSIEAMRLFVKILE 98


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,345,915
Number of Sequences: 28952
Number of extensions: 251626
Number of successful extensions: 601
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)