Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0779.Seq
         (470 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4SNH1 Cluster: Chromosome 8 SCAF14543, whole genome sh...    31   9.7  

>UniRef50_Q4SNH1 Cluster: Chromosome 8 SCAF14543, whole genome
           shotgun sequence; n=2; Tetraodontidae|Rep: Chromosome 8
           SCAF14543, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 511

 Score = 31.5 bits (68), Expect = 9.7
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 360 DTEVRPLHQDPHQAPALVTAPPRLHKISLTIS 455
           D +  P H DP  +PAL +APP+  ++ L +S
Sbjct: 457 DAKPSPDHPDPTGSPALKSAPPKTPEVELKLS 488


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 268,902,772
Number of Sequences: 1657284
Number of extensions: 3300275
Number of successful extensions: 6181
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 6122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6180
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 26030843530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)