Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0779.Seq
         (470 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4089| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.5  
SB_28082| Best HMM Match : A2M_comp (HMM E-Value=0)                    27   7.8  

>SB_4089| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 289

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 20/41 (48%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = -3

Query: 330 AFPLSSTSGTLSFRLSL--TLDLSASSF*KK--FPFLHHCP 220
           AFPL  T    S  LS+  TL  S  S  KK  FP L+HCP
Sbjct: 123 AFPLQITDRRKSVALSVQETLSYSGPSGHKKQGFPVLNHCP 163


>SB_28082| Best HMM Match : A2M_comp (HMM E-Value=0)
          Length = 1013

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = -1

Query: 359 SCYFLYLVKLPSRYL 315
           SC FL+LVK PS YL
Sbjct: 146 SCLFLFLVKTPSPYL 160


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,005,215
Number of Sequences: 59808
Number of extensions: 97930
Number of successful extensions: 161
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 982083920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)