Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0779.Seq
         (470 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g41530.1 68418.m05046 hypothetical protein similar to unknown...    29   2.1  
At3g27150.1 68416.m03396 kelch repeat-containing F-box family pr...    27   4.8  

>At5g41530.1 68418.m05046 hypothetical protein similar to unknown
           protein (pir |T01544)
          Length = 142

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -1

Query: 458 N*NRQTYFMESGRSCD*SWSLMRILMKRTNFCVSCYFL 345
           N  +QT+F +   +   SWSLM ++ +  NFC   +++
Sbjct: 88  NIKKQTFFTKFANA---SWSLMLLIQQENNFCFWMFYV 122


>At3g27150.1 68416.m03396 kelch repeat-containing F-box family
           protein contains Pfam:PF01344 Kelch motif, Pfam:PF00646
           F-box domain
          Length = 422

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 407 SWSLMRILMKRTNFCVSCY 351
           +W+L+R + KR  FC  CY
Sbjct: 243 TWTLLRGMHKRRKFCSGCY 261


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,873,129
Number of Sequences: 28952
Number of extensions: 75467
Number of successful extensions: 134
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 801831960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)