Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0778.Seq
         (788 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    24   1.6  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   4.9  
AM712903-1|CAN84642.1|  148|Tribolium castaneum hypothetical pro...    22   4.9  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   8.5  

>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = +1

Query: 718 ATVFFCMFY 744
           ATVFFC+FY
Sbjct: 92  ATVFFCLFY 100


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -1

Query: 299  MEAMRPSTISM*AFWHPPSKCRPVCAKRQIWLYPSSLEDQ 180
            ++A+  ST S+ A W PP +   +     ++  P S +D+
Sbjct: 1207 VKALVMSTDSILASWKPPVEPNGIVEYYTVYYKPVSTDDK 1246


>AM712903-1|CAN84642.1|  148|Tribolium castaneum hypothetical
           protein protein.
          Length = 148

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -3

Query: 282 FDDLDVGFLASSFEV 238
           FDD+D+  L SS+E+
Sbjct: 104 FDDVDLNSLYSSYEI 118


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -2

Query: 589 HDFEKDASYFIAL 551
           HD E DASYF  L
Sbjct: 569 HDGEVDASYFCKL 581


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,606
Number of Sequences: 336
Number of extensions: 3626
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21376414
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)