Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0778.Seq
         (788 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomy...    84   2e-17
SPCC191.01 ||SPCC417.13|sequence orphan|Schizosaccharomyces pomb...    27   3.1  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   9.4  

>SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 84.2 bits (199), Expect = 2e-17
 Identities = 42/70 (60%), Positives = 51/70 (72%)
 Frame = +2

Query: 47  LQEKFDQAAANVKNLKALPTYAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWH 226
           +   F+QAAA+VK LK  P   +LL LYA FKQATVGD +   +PGLLDLKGK K++AW 
Sbjct: 1   MSSTFEQAAADVKELKETPNSDELLKLYALFKQATVGD-NNTEKPGLLDLKGKFKWNAWE 59

Query: 227 KLAGTSKEDA 256
           +L G SKEDA
Sbjct: 60  ELKGKSKEDA 69


>SPCC191.01 ||SPCC417.13|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 178

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 62  DQAAANVKNLKALPTYAQLLNLYAHFKQATVGDAD 166
           DQ   NV++  + P + QL+ L+    +A V DAD
Sbjct: 40  DQFFRNVRDTISEPKFTQLMELWLEKSRAEVPDAD 74


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = +1

Query: 550  EEQ*NNLRPFRNHVLKVYYVLGRSVLYLFWLRIF 651
            +EQ N+ +PF+++++++Y +      Y FW + F
Sbjct: 4026 DEQGNSRKPFKDYIIQLYSL---KYDYDFWFKYF 4056


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,004,726
Number of Sequences: 5004
Number of extensions: 57976
Number of successful extensions: 133
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)