Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0778.Seq
         (788 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0417 - 3692247-3692329,3692442-3692504,3693233-3693350,369...    62   4e-10
03_05_0107 - 20883353-20883627,20883739-20883801,20884608-208847...    62   5e-10
06_01_0108 - 860080-860162,860276-860338,860857-860974,861481-86...    59   5e-09
04_04_1623 - 34846056-34846223,34846547-34846644,34846738-348468...    44   1e-04
04_04_1485 + 33915978-33916412                                         28   9.7  
02_01_0428 - 3127098-3129254                                           28   9.7  

>08_01_0417 -
           3692247-3692329,3692442-3692504,3693233-3693350,
           3694084-3694095
          Length = 91

 Score = 62.5 bits (145), Expect = 4e-10
 Identities = 33/72 (45%), Positives = 43/72 (59%)
 Frame = +2

Query: 41  MSLQEKFDQAAANVKNLKALPTYAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDA 220
           M LQE F+Q A   K L    +    L LY  +KQATVGD + A RPG+   + +AK+DA
Sbjct: 1   MGLQEDFEQYAEKAKTLPESTSNENKLILYGLYKQATVGDVNTA-RPGIFAQRDRAKWDA 59

Query: 221 WHKLAGTSKEDA 256
           W  + G SKE+A
Sbjct: 60  WKAVEGKSKEEA 71


>03_05_0107 -
           20883353-20883627,20883739-20883801,20884608-20884725,
           20885012-20885023
          Length = 155

 Score = 62.1 bits (144), Expect = 5e-10
 Identities = 32/72 (44%), Positives = 44/72 (61%)
 Frame = +2

Query: 41  MSLQEKFDQAAANVKNLKALPTYAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDA 220
           M LQE F++ A  VK L    +    L LY  +KQATVGD +  +RPG+   + +AK+DA
Sbjct: 1   MGLQEDFEEYAEKVKTLPESTSNEDKLILYGLYKQATVGDVN-TSRPGIFAQRDRAKWDA 59

Query: 221 WHKLAGTSKEDA 256
           W  + G SKE+A
Sbjct: 60  WKAVEGKSKEEA 71


>06_01_0108 -
           860080-860162,860276-860338,860857-860974,861481-861492
          Length = 91

 Score = 58.8 bits (136), Expect = 5e-09
 Identities = 31/72 (43%), Positives = 42/72 (58%)
 Frame = +2

Query: 41  MSLQEKFDQAAANVKNLKALPTYAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDA 220
           M LQE+F++ A   K L    +    L LY  +KQATVG      RPG+ +LK + K+DA
Sbjct: 1   MGLQEEFEEFAEKAKTLPDTISNEDKLLLYGLYKQATVGPVT-TGRPGIFNLKDRYKWDA 59

Query: 221 WHKLAGTSKEDA 256
           W  + G SKE+A
Sbjct: 60  WKAVEGKSKEEA 71


>04_04_1623 -
           34846056-34846223,34846547-34846644,34846738-34846829,
           34847096-34847202,34847385-34847490,34848108-34848547
          Length = 336

 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 26/62 (41%), Positives = 36/62 (58%)
 Frame = +2

Query: 71  AANVKNLKALPTYAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAGTSKE 250
           AA+  +  ++P  AQL  LY  +K AT G    A +P  L LK +AK++AWHKL     E
Sbjct: 102 AASAASGTSVPEQAQL-QLYGLYKIATEGPCT-APQPSALKLKARAKWNAWHKLGAMPTE 159

Query: 251 DA 256
           +A
Sbjct: 160 EA 161


>04_04_1485 + 33915978-33916412
          Length = 144

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 14/57 (24%), Positives = 27/57 (47%)
 Frame = +1

Query: 607 VLGRSVLYLFWLRIFIYILSGHHVXXXXXXXXXXXXCATVFFCMFYFFFLINNLLGY 777
           V+G +V  +FW+ + +     HH+            C  VF C+F+ + ++ +L  Y
Sbjct: 66  VIGTAVFLVFWVVLLLIGTLDHHM--SVSWRRFFVTCG-VFECLFWLYLVVGHLREY 119


>02_01_0428 - 3127098-3129254
          Length = 718

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 297 GSYETFDDLDVGFLASSFEVPASLCQASNLAL 202
           G  +  D LD+ F + S E+P ++C  +NL +
Sbjct: 571 GRLKALDMLDLSFNSFSGEIPQAICNLTNLEM 602


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,441,665
Number of Sequences: 37544
Number of extensions: 349858
Number of successful extensions: 699
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)