Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0778.Seq
         (788 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003140-9|AAB54171.1|   86|Caenorhabditis elegans Acyl-coenzyme...    79   3e-15
Z46794-8|CAA86779.1|  385|Caenorhabditis elegans Hypothetical pr...    69   4e-12
Z68004-6|CAA91987.2|  116|Caenorhabditis elegans Hypothetical pr...    58   9e-09
Z92826-2|CAB07319.1|  266|Caenorhabditis elegans Hypothetical pr...    43   3e-04
AL023828-1|CAA19448.1|  115|Caenorhabditis elegans Hypothetical ...    39   0.005
Z81120-7|CAB03343.2|  274|Caenorhabditis elegans Hypothetical pr...    36   0.044

>AF003140-9|AAB54171.1|   86|Caenorhabditis elegans Acyl-coenzyme a
           binding proteinprotein 1 protein.
          Length = 86

 Score = 79.4 bits (187), Expect = 3e-15
 Identities = 38/68 (55%), Positives = 49/68 (72%)
 Frame = +2

Query: 59  FDQAAANVKNLKALPTYAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAG 238
           FD AAA VK LK  P+  +LL LYA FKQ TVGD +  ++PG+ DLKGKAK+ AW +  G
Sbjct: 5   FDDAAATVKTLKTSPSNDELLKLYALFKQGTVGD-NTTDKPGMFDLKGKAKWSAWDEKKG 63

Query: 239 TSKEDARK 262
            +K+DA+K
Sbjct: 64  LAKDDAQK 71


>Z46794-8|CAA86779.1|  385|Caenorhabditis elegans Hypothetical
           protein R06F6.9 protein.
          Length = 385

 Score = 68.9 bits (161), Expect = 4e-12
 Identities = 33/74 (44%), Positives = 46/74 (62%)
 Frame = +2

Query: 38  NMSLQEKFDQAAANVKNLKALPTYAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFD 217
           + S Q  F++A  N+K LK  P     L LY  FKQAT GD     RPG++D  G+AK+D
Sbjct: 22  SFSAQADFEKAQKNLKTLKEEPDNDVKLQLYGLFKQATAGDVQ-GKRPGMMDFVGRAKYD 80

Query: 218 AWHKLAGTSKEDAR 259
           AW+ L G ++++AR
Sbjct: 81  AWNTLKGQTQDEAR 94


>Z68004-6|CAA91987.2|  116|Caenorhabditis elegans Hypothetical
           protein F47B10.7 protein.
          Length = 116

 Score = 57.6 bits (133), Expect = 9e-09
 Identities = 30/78 (38%), Positives = 48/78 (61%), Gaps = 4/78 (5%)
 Frame = +2

Query: 41  MSLQEKFDQAAANVKNLKALPTYA----QLLNLYAHFKQATVGDADPANRPGLLDLKGKA 208
           MSLQEKFD A   ++ L      A    Q L  Y+ FKQA++GD +  +RPG+  +  + 
Sbjct: 1   MSLQEKFDAAVEIIQKLPKTGPVATSNDQKLTFYSLFKQASIGDVN-TDRPGIFSIIERK 59

Query: 209 KFDAWHKLAGTSKEDARK 262
           K+D+W +L G S+++A++
Sbjct: 60  KWDSWKELEGVSQDEAKE 77


>Z92826-2|CAB07319.1|  266|Caenorhabditis elegans Hypothetical
           protein C18D11.2 protein.
          Length = 266

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 20/48 (41%), Positives = 31/48 (64%)
 Frame = +2

Query: 119 LNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAGTSKEDARK 262
           LN YA FKQAT G  D   +P   D++G  K++AW+KL   + ++A++
Sbjct: 28  LNFYALFKQATHGKCD-LPKPSFYDIQGVYKWNAWNKLDNMTMDEAKQ 74


>AL023828-1|CAA19448.1|  115|Caenorhabditis elegans Hypothetical
           protein Y17G7B.1 protein.
          Length = 115

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
 Frame = +2

Query: 59  FDQAAANVKNLKALPTYAQLLNLYAHFKQATVGDA--DPANRPGLLDLKGKAKFDAWHKL 232
           F+ AA  ++ LK+ PT  + L LYA +KQA  GD   +        D  G+ K+ AW   
Sbjct: 15  FEIAAEEMRRLKSEPTDRERLKLYALYKQALHGDIPNEDVYPVPAGDEVGRKKYAAWKSQ 74

Query: 233 AGTSKEDAR 259
            G + E  R
Sbjct: 75  KGANSEKCR 83


>Z81120-7|CAB03343.2|  274|Caenorhabditis elegans Hypothetical
           protein T12D8.3 protein.
          Length = 274

 Score = 35.5 bits (78), Expect = 0.044
 Identities = 18/63 (28%), Positives = 27/63 (42%)
 Frame = +2

Query: 35  INMSLQEKFDQAAANVKNLKALPTYAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKF 214
           I+  L+ KFD A   +           +L  Y  +KQA  G AD    P   +   + KF
Sbjct: 24  IDTLLEAKFDAATTRLPGFLTKIDQKTILKFYGLYKQAVEGPADSKKGPYWFETVARKKF 83

Query: 215 DAW 223
           ++W
Sbjct: 84  NSW 86


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,306,447
Number of Sequences: 27780
Number of extensions: 316133
Number of successful extensions: 709
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)