Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0778.Seq
         (788 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g31812.1 68414.m03905 acyl-CoA binding protein / ACBP identic...    63   2e-10
At4g09140.1 68417.m01509 DNA mismatch repair protein MLH1 (MLH1)...    29   2.7  

>At1g31812.1 68414.m03905 acyl-CoA binding protein / ACBP identical
           to acyl-CoA-binding protein (ACBP) [Arabidopsis
           thaliana] SWISS-PROT:P57752
          Length = 92

 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 31/72 (43%), Positives = 44/72 (61%)
 Frame = +2

Query: 41  MSLQEKFDQAAANVKNLKALPTYAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDA 220
           M L+E+F++ A  V  L  LP+   LL LY  +KQA  G  D  +RPG+  +K +AK+DA
Sbjct: 1   MGLKEEFEEHAEKVNTLTELPSNEDLLILYGLYKQAKFGPVD-TSRPGMFSMKERAKWDA 59

Query: 221 WHKLAGTSKEDA 256
           W  + G S E+A
Sbjct: 60  WKAVEGKSSEEA 71


>At4g09140.1 68417.m01509 DNA mismatch repair protein MLH1 (MLH1)
           identical to MLH1 protein [Arabidopsis thaliana]
           GI:3893081
          Length = 737

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/42 (40%), Positives = 20/42 (47%)
 Frame = +2

Query: 74  ANVKNLKALPTYAQLLNLYAHFKQATVGDADPANRPGLLDLK 199
           ANV NL     Y Q L  +AHF    + D  P +   LL LK
Sbjct: 501 ANVVNLSKELMYQQTLRRFAHFNAIQLSDPAPLSELILLALK 542


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,217,728
Number of Sequences: 28952
Number of extensions: 289673
Number of successful extensions: 683
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1775300800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)