Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0777.Seq
         (608 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    25   0.50 
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    25   0.50 
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    25   0.50 
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    24   1.2  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    24   1.2  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    22   4.6  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 25.0 bits (52), Expect = 0.50
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = +2

Query: 404 SPTQATELADPTEKIELYSTTLVPVAKATEAPAAPNYQ 517
           SPT AT +A  T  I+  S T+ P A          YQ
Sbjct: 252 SPTTATAIASATVTIQNVSNTIPPFASRGSMHFPNQYQ 289


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 25.0 bits (52), Expect = 0.50
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = +2

Query: 404 SPTQATELADPTEKIELYSTTLVPVAKATEAPAAPNYQ 517
           SPT AT +A  T  I+  S T+ P A          YQ
Sbjct: 200 SPTTATAIASATVTIQNVSNTIPPFASRGSMHFPNQYQ 237


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 25.0 bits (52), Expect = 0.50
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = +2

Query: 404 SPTQATELADPTEKIELYSTTLVPVAKATEAPAAPNYQ 517
           SPT AT +A  T  I+  S T+ P A          YQ
Sbjct: 383 SPTTATAIASATVTIQNVSNTIPPFASRGSMHFPNQYQ 420


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +2

Query: 401 FSPTQATELADPTEKIELYSTTLVPVAKATEAPAAPNY 514
           F+ + +  L  P+  I+LY+T+ V     + +   PNY
Sbjct: 29  FNISTSNYLYTPSSTIDLYNTSSVSNFNESSSSVFPNY 66


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +2

Query: 401 FSPTQATELADPTEKIELYSTTLVPVAKATEAPAAPNY 514
           F+ + +  L  P+  I+LY+T+ V     + +   PNY
Sbjct: 29  FNISTSNYLYTPSSTIDLYNTSSVSNFNESSSSVFPNY 66


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +1

Query: 331 CRYQLRTATRKRSLLPSATREPDLQPHSSDRTG 429
           C+Y  R  T+  +LL       D +P+S D  G
Sbjct: 82  CKYCNRQFTKSYNLLIHERTHTDERPYSCDICG 114


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,109
Number of Sequences: 336
Number of extensions: 3172
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15457268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)