Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0777.Seq
(608 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 36 0.004
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 28 1.2
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 27 2.1
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 27 2.8
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 27 2.8
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom... 26 3.7
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 3.7
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 26 3.7
SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating ... 26 3.7
SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3 ... 26 5.0
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 25 6.5
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch... 25 6.5
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 25 8.7
SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual 25 8.7
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 36.3 bits (80), Expect = 0.004
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +2
Query: 299 VYIPDRRRQTLADTSYVPQQENEV--YYPQQPENPIFSPTQATELADP 436
VY+PD Y+P+ V YYPQQP P+F ++ TEL DP
Sbjct: 497 VYVPDAT-DAAKPQYYIPKDPYPVPHYYPQQPL-PLFDSSEMTELVDP 542
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 27.9 bits (59), Expect = 1.2
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +1
Query: 121 TIPTMETW-TPFPTARAIVTEEAWS*AVTTILTTTPELWAVVWPRSVPPARSRTGAFNGP 297
T P +ET TP A TE V+TI TTTP + A++ P +V T A P
Sbjct: 215 TTPMVETMITPMVEAMTTPTEVVGRSMVSTIRTTTP-MEAMITP-TVETTTLPTAAMTTP 272
Query: 298 GVHT*SSP 321
T ++P
Sbjct: 273 VEETTTTP 280
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +1
Query: 196 AVTTILTTTPELWAVVWPRSV 258
A T IL TTPE W VV +SV
Sbjct: 386 AETQILVTTPEKWDVVTRKSV 406
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 109 KRIPTIPTMETWTPFPTARAIVTE 180
K IPT PT E+ PFP+ A T+
Sbjct: 286 KSIPTTPTGESLWPFPSENANKTQ 309
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 26.6 bits (56), Expect = 2.8
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +1
Query: 130 TMETWTPFPTARAIVTEEAWS*AVTTILTTTPELWAVVWPRSVP 261
T+ TP+PT T + +VTT LT P V+ VP
Sbjct: 269 TVYVETPYPTTVTTTTTVGYPGSVTTTLTGAPSNGTVIDTVEVP 312
Score = 26.6 bits (56), Expect = 2.8
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +1
Query: 130 TMETWTPFPTARAIVTEEAWS*AVTTILTTTPELWAVVWPRSVP 261
T+ TP+PT T + +VTT LT P V+ VP
Sbjct: 347 TVYVETPYPTTVTTTTTVGYPGSVTTTLTGAPSNGTVIDTVEVP 390
Score = 26.6 bits (56), Expect = 2.8
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +1
Query: 130 TMETWTPFPTARAIVTEEAWS*AVTTILTTTPELWAVVWPRSVP 261
T+ TP+PT T + +VTT LT P V+ VP
Sbjct: 503 TVYVETPYPTTVTTTTTVGYPGSVTTTLTGAPSNGTVIDTVEVP 546
Score = 26.6 bits (56), Expect = 2.8
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +1
Query: 130 TMETWTPFPTARAIVTEEAWS*AVTTILTTTPELWAVVWPRSVP 261
T+ TP+PT T + +VTT LT P V+ VP
Sbjct: 581 TVYVETPYPTTVTTTTTVGYPGSVTTTLTGAPSNGTVIDTVEVP 624
Score = 26.2 bits (55), Expect = 3.7
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +1
Query: 130 TMETWTPFPTARAIVTEEAWS*AVTTILTTTPELWAVVWPRSVP 261
T+ TP+PT T + +VTT LT P V+ +P
Sbjct: 425 TVYVETPYPTTVTTTTTVGYPGSVTTTLTGAPSNGTVIDTVEIP 468
>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/50 (22%), Positives = 25/50 (50%)
Frame = +3
Query: 150 LSYGSGDSNRGGLVMSRYYNPYYNPRAVGGGMAAFCTASPKPHRRLQRAR 299
+++GSG++N G L +++ Y P + G + P + L++ +
Sbjct: 519 VTFGSGNTNIGSLRQTKFKQSNYTPPELNDGSRQHRPSRPSKNPSLKKKK 568
>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 412
Score = 26.2 bits (55), Expect = 3.7
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = +3
Query: 264 SPKPHRRLQRARCTYLIVAARPLPIPATYRNKKTKSITLSNQRTRSS 404
S H + + +++ +P+P YR + TLSN++T S
Sbjct: 45 SQDTHSCASKQDAVFQLLSETKIPVPNRYRKISHRLSTLSNKKTLKS 91
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -2
Query: 505 SGRRFGSLGNRYQSGGVQFDLFSGVSQFGR 416
+G FG+ N +GG F + SG FG+
Sbjct: 64 NGGLFGNRNNTTTTGGTGFGMSSGTGMFGQ 93
>SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating
kinase Crk1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 335
Score = 26.2 bits (55), Expect = 3.7
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = +3
Query: 126 PYYGNVDSLSYGSGDSNRGGLVMSRYYNPYYNPRAVGGGMAAFCTASPKP 275
P G +++L +G L M YNPY P A + +A PKP
Sbjct: 249 PPNGGMEALFSAAGHEEIDLLKMMLDYNPYRRPTAQQALEHHYFSALPKP 298
>SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 454
Score = 25.8 bits (54), Expect = 5.0
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -1
Query: 263 GGTERGHTTAHSSGVVVRIVVTAHDQASSVTIA 165
GG +R + H+S +V I+V +HD AS+ A
Sbjct: 255 GGHKRLSSRNHNSQPLVCILVGSHDHASAAVAA 287
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/43 (25%), Positives = 22/43 (51%)
Frame = +2
Query: 338 TSYVPQQENEVYYPQQPENPIFSPTQATELADPTEKIELYSTT 466
TS+ PQ ++ +Y + + S T+ + + T K++ S T
Sbjct: 720 TSFNPQHDSRIYNHNGKQKLVISFTETMDCNEITSKLQFSSKT 762
>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 515
Score = 25.4 bits (53), Expect = 6.5
Identities = 9/29 (31%), Positives = 13/29 (44%)
Frame = +2
Query: 356 QENEVYYPQQPENPIFSPTQATELADPTE 442
+ N YPQ + P+ P A DP +
Sbjct: 155 EHNGPVYPQDQQGPVIIPNSAISSTDPDD 183
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 25.0 bits (52), Expect = 8.7
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +2
Query: 383 QPENPIFSPTQATELADPTEKIELYSTTLVPVAKATEAPAAP 508
+ +PI +A PT + YST A+ TE+P P
Sbjct: 385 ETNSPIIENKEANNFLAPTSNVPAYSTP----ARPTESPPPP 422
>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +3
Query: 162 SGDSNRGGLVMSRYYNPYYNPRAV 233
S D N G + S YNP +PR +
Sbjct: 346 SNDGNHWGSLSSTIYNPSSSPRTI 369
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,237,538
Number of Sequences: 5004
Number of extensions: 46420
Number of successful extensions: 174
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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