Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0777.Seq
         (608 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34512| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.73 
SB_30326| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_30515| Best HMM Match : Lyase_8 (HMM E-Value=1.2e-05)               29   2.9  
SB_47930| Best HMM Match : Vicilin_N (HMM E-Value=1.3)                 28   5.1  
SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_39417| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  
SB_39577| Best HMM Match : DUF1213 (HMM E-Value=0.54)                  27   9.0  

>SB_34512| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1080

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 26/61 (42%), Positives = 33/61 (54%)
 Frame = +2

Query: 263 QPEAAQAPSTGQVYIPDRRRQTLADTSYVPQQENEVYYPQQPENPIFSPTQATELADPTE 442
           Q E A A S   V +P+R  QT +  S  P+Q N+V  PQ  E P  S T A  LA+P E
Sbjct: 625 QHELAVADSP-VVCLPER--QTHSGESATPEQTNQVVEPQM-EEPQGS-TSAQHLAEPDE 679

Query: 443 K 445
           +
Sbjct: 680 Q 680


>SB_30326| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1346

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 22/64 (34%), Positives = 32/64 (50%)
 Frame = +2

Query: 317  RRQTLADTSYVPQQENEVYYPQQPENPIFSPTQATELADPTEKIELYSTTLVPVAKATEA 496
            R  T   T  +    +EV   +QP+ P+ + T  TE+A PT K+   S+T +P    T  
Sbjct: 973  RTTTQKATYSLESTTSEVKLTKQPKIPVSNLTITTEIAAPT-KLTPPSSTELPA--PTRD 1029

Query: 497  PAAP 508
            PA P
Sbjct: 1030 PAQP 1033


>SB_30515| Best HMM Match : Lyase_8 (HMM E-Value=1.2e-05)
          Length = 1364

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 213 YYNPRAVGGGMAAFCTASPKP 275
           YYNP+ +GGGMA   TA   P
Sbjct: 926 YYNPKDLGGGMAMRGTAGKTP 946


>SB_47930| Best HMM Match : Vicilin_N (HMM E-Value=1.3)
          Length = 769

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
 Frame = +2

Query: 269 EAAQAPSTGQVYIPDRRRQTLADTSYVPQQENEVYYP---QQPENPIFSP-TQATELADP 436
           + AQAPST Q+ +   R++T    S   Q    +  P   + P + +  P  Q    A P
Sbjct: 181 QTAQAPSTPQIQLSIMRQETPESDSEATQTYLHIENPVSTRPPTDNVNEPDIQPNTRAQP 240

Query: 437 TEKIELYSTTLVPVAKA 487
           T + +  +  L P A A
Sbjct: 241 TSRQQETAAPLSPFAAA 257


>SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1670

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
 Frame = +2

Query: 269  EAAQAPSTGQVYIPDRRRQTLADTSYVPQQENEVYYP---QQPENPIFSP-TQATELADP 436
            + AQAPST Q+ +   R++T    S   Q    +  P   + P + +  P  Q    A P
Sbjct: 848  QTAQAPSTPQIQLSIMRQETPESDSEATQTYLHIENPVSTRPPTDNVNEPDIQPNTRAQP 907

Query: 437  TEKIELYSTTLVPVAKA 487
            T + +  +  L P A A
Sbjct: 908  TSRQQETAAPLSPFAAA 924


>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5659

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
 Frame = +2

Query: 266  PEAAQAPSTGQVYIPDRRRQTLADTSYVPQQENEV-YYPQQPENPIFSPTQATELADPTE 442
            PE  +AP T     P+    T+A  + +PQ+        + PE  +   T ATE  +  E
Sbjct: 4455 PETTEAPGT--TVAPET---TMAPETTIPQETTIAPESTEAPETTMAPETTATESTETPE 4509

Query: 443  KIELYSTTLVPVAKATEAPAA 505
               +  TT+ P  + T AP A
Sbjct: 4510 TTIVPETTVAP--ETTMAPEA 4528


>SB_39417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 246

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 337 IGKGLAATIRYVHLAR*RRLCGFG 266
           I  G+A  ++ V L R RRLCG G
Sbjct: 91  ISPGMANRVQSVRLGRRRRLCGLG 114


>SB_39577| Best HMM Match : DUF1213 (HMM E-Value=0.54)
          Length = 240

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
 Frame = +1

Query: 211 LTTTPELWAVVWPRSVPPARSRTGAFNGPGVHT*SSPPDPCRYQLRT-------ATRKRS 369
           L T+P+    + PR+ P   S+T     P     +SP    +  L+T       A+RK S
Sbjct: 114 LKTSPKTSPEIGPRTSPKTSSKTSPKTSPKSSPKTSPKTSSKTSLKTSQKTSLNASRKTS 173

Query: 370 LLPSATREPDLQPHSSDRT 426
              S  R     P +S +T
Sbjct: 174 RRTSLKRSLKTSPKTSRKT 192


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,433,338
Number of Sequences: 59808
Number of extensions: 397174
Number of successful extensions: 1232
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1227
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)