Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0777.Seq
         (608 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.3  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.3  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   5.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.4  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   9.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.4  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -2

Query: 553 SPWAPQ--LRVLPALVVRSGRRFGSLGNRYQSGGV 455
           +PW  +  + +LP L+V    ++    NRY SG V
Sbjct: 342 APWVKRVFIHILPRLLVMRRPQYKFETNRYSSGRV 376


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -2

Query: 553 SPWAPQ--LRVLPALVVRSGRRFGSLGNRYQSGGV 455
           +PW  +  + +LP L+V    ++    NRY SG V
Sbjct: 342 APWVKRVFIHILPRLLVMRRPQYKFETNRYSSGRV 376


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 311 DRRRQTLADTSYVPQQENEVYYP 379
           D   QT++ T+ V Q+E E Y P
Sbjct: 338 DLTTQTVSTTADVLQEEEEEYSP 360


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
 Frame = +2

Query: 311  DRRRQTLADTSYVPQQENEV--YYPQQPENPIFSPTQATELADPTEKIELYSTTLV 472
            DR R+TL      PQQ+ +      QQ +     P      A PT+K     + L+
Sbjct: 1437 DRDRKTLTSAPQQPQQQQQQQQQQQQQQQQLNHYPDLHNLYAVPTDKKSACDSKLI 1492


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 347 VPQQENEVYYPQQPE 391
           VP + NE+YY   PE
Sbjct: 202 VPGKRNEIYYNCCPE 216


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
 Frame = -2

Query: 547  WAPQLRVLPALVVRSGRRFG-SLGNRYQSGGVQFDLFSGVSQFGRLSGAEDRVLWLLRVI 371
            W+P L   P L  R G   G ++G R  S       FS VS  G   GAE R+  L    
Sbjct: 1027 WSPPL---PEL--RHGDIQGFNVGYRETSSSNPSYNFSSVSGDGEEGGAELRLTGLRPYT 1081

Query: 370  DFVFLLRYVAGIGKG 326
             +  +++    +G G
Sbjct: 1082 KYTLVVQAYNQVGSG 1096


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
 Frame = -2

Query: 547  WAPQLRVLPALVVRSGRRFG-SLGNRYQSGGVQFDLFSGVSQFGRLSGAEDRVLWLLRVI 371
            W+P L   P L  R G   G ++G R  S       FS VS  G   GAE R+  L    
Sbjct: 1023 WSPPL---PEL--RHGDIQGFNVGYRETSSSNPSYNFSSVSGDGEEGGAELRLTGLRPYT 1077

Query: 370  DFVFLLRYVAGIGKG 326
             +  +++    +G G
Sbjct: 1078 KYTLVVQAYNQVGSG 1092


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,047
Number of Sequences: 438
Number of extensions: 4126
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)