Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0777.Seq
(608 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g66060.1 68418.m08323 oxidoreductase, 2OG-Fe(II) oxygenase fa... 29 1.8
At1g20270.1 68414.m02531 oxidoreductase, 2OG-Fe(II) oxygenase fa... 29 2.4
At5g16220.1 68418.m01895 octicosapeptide/Phox/Bem1p (PB1) domain... 29 3.2
At3g57170.1 68416.m06365 N-acetylglucosaminyl transferase compon... 28 4.2
At3g12500.1 68416.m01556 basic endochitinase identical to basic ... 28 4.2
At4g26830.1 68417.m03863 glycosyl hydrolase family 17 protein si... 28 5.6
At3g51510.1 68416.m05641 expressed protein 28 5.6
At5g28120.1 68418.m03396 hypothetical protein 27 7.4
At5g28110.1 68418.m03395 hypothetical protein 27 7.4
At5g18510.1 68418.m02185 hypothetical protein 27 7.4
At5g15680.1 68418.m01834 expressed protein 27 9.7
At4g37130.1 68417.m05258 hydroxyproline-rich glycoprotein family... 27 9.7
At4g28500.1 68417.m04077 no apical meristem (NAM) family protein... 27 9.7
At4g26930.1 68417.m03875 myb family transcription factor (MYB97)... 27 9.7
At3g60370.1 68416.m06752 immunophilin / FKBP-type peptidyl-proly... 27 9.7
At2g28700.1 68415.m03488 MADS-box protein-related contains INTER... 27 9.7
>At5g66060.1 68418.m08323 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to prolyl 4-hydroxylase, alpha
subunit, from Rattus norvegicus [GI:474940], Mus
musculus [SP|Q60715], Homo sapiens [GI:18073925];
contains PF03171 2OG-Fe(II) oxygenase superfamily domain
Length = 267
Score = 29.5 bits (63), Expect = 1.8
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = +3
Query: 276 HRRLQRARCTYLIVAARPLPIPATYRNKKTKSITLSNQRTRSSAPLKR 419
H L + C YLI A+P +T ++KT T S RT S L R
Sbjct: 91 HNFLTKEECKYLIELAKPHMEKSTVVDEKTGKSTDSRVRTSSGTFLAR 138
>At1g20270.1 68414.m02531 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to prolyl 4-hydroxylase, alpha
subunit, from Gallus gallus [GI:212530], Rattus
norvegicus [GI:474940], Mus musculus [SP|Q60715];
contains PF03171 2OG-Fe(II) oxygenase superfamily domain
Length = 287
Score = 29.1 bits (62), Expect = 2.4
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +3
Query: 276 HRRLQRARCTYLIVAARPLPIPATYRNKKTKSITLSNQRTRSSAPLKR 419
H L + C YLI A+P + +T + +T S RT S L+R
Sbjct: 89 HNFLSKEECEYLISLAKPHMVKSTVVDSETGKSKDSRVRTSSGTFLRR 136
>At5g16220.1 68418.m01895 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein hypothetical proteins -
Arabidopsis thaliana contains Pfam profile PF00564: PB1
domain
Length = 476
Score = 28.7 bits (61), Expect = 3.2
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +2
Query: 263 QPEAAQAPSTGQVYIPDRRRQTLADTSYVPQQENEVYYPQQPE-NPIF 403
Q + Q TGQ YI TL T+Y N VYY + P+ PI+
Sbjct: 326 QQQHIQVIYTGQPYITGNSPMTLPATAY--HHTNHVYYQRPPQPYPIY 371
>At3g57170.1 68416.m06365 N-acetylglucosaminyl transferase component
family protein / Gpi1 family protein similar to
SP|O14357 N-acetylglucosaminyl-phosphatidylinositol
biosynthetic protein gpi1 {Schizosaccharomyces pombe};
contains Pfam profile PF05024: N-acetylglucosaminyl
transferase component (Gpi1)
Length = 560
Score = 28.3 bits (60), Expect = 4.2
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 369 SITLSNQRTRSSAPLKRPNWLTPL 440
S++ SN ++ APLK+P W+ L
Sbjct: 49 SLSFSNSSPQTKAPLKKPKWVDDL 72
>At3g12500.1 68416.m01556 basic endochitinase identical to basic
endochitinase precursor SP:P19171 from [Arabidopsis
thaliana]
Length = 322
Score = 28.3 bits (60), Expect = 4.2
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = -3
Query: 342 LVSARVWRRRSGMYTWPVEGACAASGWRYRTRPYHRPQLWGCSKDCSNGS*P 187
L SA R++G P C+ GW T PY + GC C+ G P
Sbjct: 17 LSSAEQCGRQAGGALCPNGLCCSEFGWCGNTEPYCKQP--GCQSQCTPGGTP 66
>At4g26830.1 68417.m03863 glycosyl hydrolase family 17 protein
similar to elicitor inducible chitinase Nt-SubE76
GI:11071974 from [Nicotiana tabacum]
Length = 448
Score = 27.9 bits (59), Expect = 5.6
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +3
Query: 57 IMKVMYAFVMMSCA-LLVQAYPYNPYYGNVD--SLSYGSGDSNRGGL 188
++K M A + + + L+V AYP+ Y N D SL Y N G +
Sbjct: 179 VVKPMLALLQQTSSYLMVNAYPFFAYAANADKISLDYALFKENAGNI 225
>At3g51510.1 68416.m05641 expressed protein
Length = 181
Score = 27.9 bits (59), Expect = 5.6
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Frame = -1
Query: 314 DQVCTPGPLKAPV--RLRAGGTERGHTTAHSSGVVVRIVVTAHDQAS 180
D+ C P K+P G +GH + V R+VVTA + S
Sbjct: 18 DECCNRSPTKSPFPGHHPLAGRRKGHLLHYERSTVRRLVVTAATEGS 64
>At5g28120.1 68418.m03396 hypothetical protein
Length = 506
Score = 27.5 bits (58), Expect = 7.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 129 YYGNVDSLSYGSGDSNRGGLVMSR 200
Y GN+D + +G GD ++ L+ SR
Sbjct: 122 YVGNIDRVRWGPGDKDQKTLIKSR 145
>At5g28110.1 68418.m03395 hypothetical protein
Length = 493
Score = 27.5 bits (58), Expect = 7.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 129 YYGNVDSLSYGSGDSNRGGLVMSR 200
Y GN+D + +G GD ++ L+ SR
Sbjct: 122 YVGNIDRVRWGPGDKDQKTLIKSR 145
>At5g18510.1 68418.m02185 hypothetical protein
Length = 702
Score = 27.5 bits (58), Expect = 7.4
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +2
Query: 392 NPIFSPTQATELADPTEKIE 451
+P+FSP + +E+ D EK+E
Sbjct: 137 SPVFSPLECSEMRDSAEKLE 156
>At5g15680.1 68418.m01834 expressed protein
Length = 2151
Score = 27.1 bits (57), Expect = 9.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 559 PSSPWAPQLRVLPALVVRSGRRFGSLGN 476
P SP P+L ++P RSG+ SL N
Sbjct: 1458 PLSPMPPELNIVPVATGRSGQLLPSLVN 1485
>At4g37130.1 68417.m05258 hydroxyproline-rich glycoprotein family
protein
Length = 513
Score = 27.1 bits (57), Expect = 9.7
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = +2
Query: 296 QVYIPDRRRQTLADTSYVPQQENEVYYPQQPE--NPIFSPTQ 415
Q P QT + + PQQ N ++ QP+ N IFS +Q
Sbjct: 8 QQQTPQPLFQTQQTSLFQPQQTNSIFSQSQPQQTNSIFSQSQ 49
>At4g28500.1 68417.m04077 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
Length = 305
Score = 27.1 bits (57), Expect = 9.7
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 162 SGDSNRGGLVMSRYYNPYYNPRAVGGGMAAFCTASPKPH 278
S + G LV+S+ + PR GG +AA TA +P+
Sbjct: 203 SEEEKEGELVVSKVFYQT-QPRQCGGSVAAAATAKDRPY 240
>At4g26930.1 68417.m03875 myb family transcription factor (MYB97)
contains Pfam profile: PF00249 myb-like DNA-binding
domain ;similar to anther-specific myb-related protein 2
GI:11066263 from [Nicotiana tabacum]
Length = 389
Score = 27.1 bits (57), Expect = 9.7
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +2
Query: 314 RRRQTLADTSYVPQQENEVYYPQQPENPIFSPTQATELADP 436
R+ L Y + YPQQP +P+ S T A+ P
Sbjct: 124 RQGLPLYPPEYSQNNHQQQMYPQQPSSPLPSQTPASSFTFP 164
>At3g60370.1 68416.m06752 immunophilin / FKBP-type peptidyl-prolyl
cis-trans isomerase family protein SP:Q9M222; similar to
FKBP-type peptidyl-prolyl cis-trans isomerase fkpA
precursor (PPiase) (Rotamase)(SP:Q8X880) [Escherichia
coli O157:H7] ; contains Pfam PF00254: peptidyl-prolyl
cis-trans isomerase, FKBP-type
Length = 242
Score = 27.1 bits (57), Expect = 9.7
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +3
Query: 255 CTASPKPHRR-LQRARCTYLIVAARPLPIPATYRNKKTKSITLSNQR 392
C+ S +P + L R Y++VA+ L +PA + KTKS + ++R
Sbjct: 32 CSLSEEPKDQCLSRRSLVYVLVASPCLLLPALSSSAKTKSKSPYDER 78
>At2g28700.1 68415.m03488 MADS-box protein-related contains
INTERPRO: IPR002100 MADS-box domain
Length = 329
Score = 27.1 bits (57), Expect = 9.7
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Frame = +2
Query: 284 PSTGQVYIPDRRRQTLAD---TSYVPQQENEVYYPQQPENPIFSPTQ 415
P Q IP + D ++++P EVY P ++ +++P Q
Sbjct: 248 PDMNQSIIPSNQGAEHVDFLESNFLPNNNQEVYIPVMDQDEVYNPNQ 294
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,092,990
Number of Sequences: 28952
Number of extensions: 268702
Number of successful extensions: 884
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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