Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0776.Seq
         (647 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    25   0.54 
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    25   0.54 
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    24   1.2  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    22   5.0  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   8.7  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 136 RNSCSRISCHSPLTCRLQTNLEIGLLWCCRNER 234
           RN  SR    + L C  +    IG+LW   N+R
Sbjct: 804 RNQTSRRGDPAVLQCEAKGEKPIGILWNINNKR 836


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 76  HRQP*KVRFTYSMWKFVAVSRNSCSRISCHS 168
           + +P K+ FT+  WK +  S  S   + C S
Sbjct: 47  NEEPEKLHFTFKSWKVLYTSLTSFGYLFCAS 77


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 12/50 (24%), Positives = 23/50 (46%)
 Frame = -2

Query: 325 VWRAHRLSQSFRMHPTARIPLLHPQLLIKRAVHCDNTIAAQSQDLFVIYT 176
           +W++++ +Q F       + LL     +   +HC+NT         V+YT
Sbjct: 123 IWKSYKRTQIFITCELFFVILLWISFFLNFMLHCNNTTWRCLYRWIVLYT 172


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -3

Query: 93  FSRLSVCSFWVIFFILN 43
           + R+ + +FW  FFI+N
Sbjct: 266 WDRVMLLTFWSAFFIVN 282


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 284  PHCSNTPVTPPAAHKTCRSL 225
            P   ++ V PP  H T +SL
Sbjct: 1797 PSVHSSTVVPPPQHSTTQSL 1816


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,562
Number of Sequences: 336
Number of extensions: 3209
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)