Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0776.Seq
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.13 |||FHA domain protein Far10 |Schizosaccharomyces pomb...    26   4.1  
SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c...    25   7.1  
SPAC5H10.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.4  
SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pomb...    25   9.4  

>SPBC3H7.13 |||FHA domain protein Far10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 495 STLNILPLLNTDNERVKDIYMNAMPVLVQRCVDSHEEHHWLQN 623
           +T    P  + D+E + D  M  M    QRCV+ +E    L+N
Sbjct: 131 ATFATTPARSLDSEVMLDSIMRQMVFQYQRCVELNENLESLEN 173


>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 559

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -3

Query: 132 YRDKLPHGVGKTNFSRLSVCSFWVIFFILNAGRLENMDLF 13
           Y+++LP   G T+   +S   +WVI F  +  R E +  F
Sbjct: 184 YKNRLPADAGITSDFLISYFVYWVISFPFHLIRPEYLQRF 223


>SPAC5H10.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 89

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = -2

Query: 367 LRPAALILVLAKGPVWRAHRLSQS 296
           +R  + ++VL KGP+W+   +  +
Sbjct: 30  IRNISFLIVLTKGPIWKVSSMEST 53


>SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 631

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 57  ISPKNYTPTTVKSSFYLLHVEVCRGIEEF 143
           +  KN++ T +    YL+ + V RGI E+
Sbjct: 416 VDAKNFSTTPIALFQYLMALAVVRGIREY 444


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,616,277
Number of Sequences: 5004
Number of extensions: 52070
Number of successful extensions: 111
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)